{
    "type": "genome",
    "identifier": "GCA_022741065.1",
    "organism": "Bifidobacterium pseudocatenulatum",
    "title": "Bifidobacterium pseudocatenulatum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022741065.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301372",
        "wgs_master": "JAIIPR000000000.1",
        "refseq_category": "na",
        "taxid": "28026",
        "species_taxid": "28026",
        "organism_name": "Bifidobacterium pseudocatenulatum",
        "infraspecific_name": "",
        "isolate": "Map_156_001",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274106v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/741/065/GCA_022741065.1_ASM2274106v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium pseudocatenulatum"
        ],
        "sample_taxid": [
            "28026"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.683 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2398000",
        "Number of Sequences": "172",
        "Longest Sequences (bp)": "337128",
        "N50 (bp)": "139920",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.6",
        "Number of CDSs": "1857",
        "Average Protein Length": "346.3",
        "Coding Ratio (%)": "80.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bifidobacterium pseudocatenulatum",
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                "accession": "GCA_000771445.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 653,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=DSM 20438",
                "accession": "GCA_000173435.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1732,
                "matched_fragments": 661,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=LMG 10505",
                "accession": "GCA_000741685.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1161,
                "matched_fragments": 660,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=JCM 1200",
                "accession": "GCA_001025215.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.112,
                "matched_fragments": 662,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
                "strain": "strain=DSM 21854",
                "accession": "GCA_000771545.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9308,
                "matched_fragments": 561,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
                "strain": "strain=DSM 21854",
                "accession": "GCA_000741605.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8822,
                "matched_fragments": 577,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
                "strain": "strain=JCM 15439",
                "accession": "GCA_001042615.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8203,
                "matched_fragments": 580,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=DSM 16992",
                "accession": "GCA_000173455.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7433,
                "matched_fragments": 547,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=DSM 16992",
                "accession": "GCA_000771025.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.6553,
                "matched_fragments": 527,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
                "taxid": 2809027,
                "species_taxid": 2809027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1609,
                "matched_fragments": 291,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum",
                "strain": "strain=ATCC 25526",
                "accession": "GCA_022691205.1",
                "taxid": 31954,
                "species_taxid": 1694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6421,
                "matched_fragments": 219,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium commune",
                "strain": "strain=DSM 28792",
                "accession": "GCA_014191315.1",
                "taxid": 1505727,
                "species_taxid": 1505727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2483,
                "matched_fragments": 92,
                "total_fragments": 718,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001025215.1",
                "gtdb_species": "s__Bifidobacterium pseudocatenulatum",
                "ani": 98.112,
                "matched_fragments": 662,
                "total_fragments": 718,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 112,
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            },
            {
                "accession": "GCF_002742445.1",
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                "matched_fragments": 573,
                "total_fragments": 718,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000800455.1",
                "gtdb_species": "s__Bifidobacterium kashiwanohense_A",
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                "matched_fragments": 574,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.1942,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001042615.1",
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                "matched_fragments": 581,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "99.07",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_001025195.1",
                "gtdb_species": "s__Bifidobacterium catenulatum",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "99.04",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
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        "genome_size": 2297695.625,
        "gc_content": 56.35,
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        "rRNA16S_genes": 6.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "anaerobic_respiration": 1.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium pseudocatenulatum"
    ],
    "_genome_taxon": [
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        "pseudocatenulatum",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium pseudocatenulatum",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Bifidobacteriaceae",
        "Bifidobacterium",
        "Bifidobacterium",
        "pseudocatenulatum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}