{ "type": "genome", "identifier": "GCA_022741185.1", "organism": "Klebsiella pneumoniae", "title": "Klebsiella pneumoniae", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022741185.1", "bioproject": "PRJNA747761", "biosample": "SAMN20301367", "wgs_master": "JAIIPM000000000.1", "refseq_category": "na", "taxid": "573", "species_taxid": "573", "organism_name": "Klebsiella pneumoniae", "infraspecific_name": "", "isolate": "Map_155_005", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2274118v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/741/185/GCA_022741185.1_ASM2274118v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella pneumoniae" ], "sample_taxid": [ "573" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mozambique" ], "sample_host_location_id": [], "data_size": "1.340 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 52.78, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4699679", "Number of Sequences": "949", "Longest Sequences (bp)": "37359", "N50 (bp)": "7042", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "3694", "Average Protein Length": "290.5", "Coding Ratio (%)": "68.5", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=NBRC 14940", "accession": "GCA_001590945.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 99.0476, "matched_fragments": 1002, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=DSM 30104", "accession": "GCA_000281755.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 99.0255, "matched_fragments": 1015, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=FDAARGOS_775", "accession": "GCA_006364295.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 99.0162, "matched_fragments": 1016, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000742135.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 99.0037, "matched_fragments": 1019, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 98.9971, "matched_fragments": 1020, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000788015.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 98.9937, "matched_fragments": 1040, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae subsp. rhinoscleromatis", "strain": "strain=ATCC 13884", "accession": "GCA_000163455.1", "taxid": 39831, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 98.6935, "matched_fragments": 994, "total_fragments": 1087, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.7924, "matched_fragments": 613, "total_fragments": 1087, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", 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