{
    "type": "genome",
    "identifier": "GCA_022741665.1",
    "organism": "Bacteroides fragilis",
    "title": "Bacteroides fragilis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022741665.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301326",
        "wgs_master": "JAIINX000000000.1",
        "refseq_category": "na",
        "taxid": "817",
        "species_taxid": "817",
        "organism_name": "Bacteroides fragilis",
        "infraspecific_name": "",
        "isolate": "Map_149_014",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274166v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/741/665/GCA_022741665.1_ASM2274166v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides fragilis"
        ],
        "sample_taxid": [
            "817"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "1.477 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5141581",
        "Number of Sequences": "197",
        "Longest Sequences (bp)": "175549",
        "N50 (bp)": "52928",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.6",
        "Number of CDSs": "4076",
        "Average Protein Length": "362.5",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=FDAARGOS_1512",
                "accession": "GCA_020097275.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6918,
                "matched_fragments": 1258,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=ATCC 25285",
                "accession": "GCA_001997325.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6539,
                "matched_fragments": 1255,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=CCUG4856T",
                "accession": "GCA_005706655.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6255,
                "matched_fragments": 1276,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=NCTC 9343",
                "accession": "GCA_000025985.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5994,
                "matched_fragments": 1289,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=NCTC 9343",
                "accession": "GCA_900445515.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5948,
                "matched_fragments": 1280,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI 5482",
                "accession": "GCA_022453665.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3816,
                "matched_fragments": 380,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_023277905.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.015,
                "matched_fragments": 325,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caccae",
                "strain": "strain=ATCC 43185",
                "accession": "GCA_025146315.1",
                "taxid": 47678,
                "species_taxid": 47678,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8755,
                "matched_fragments": 373,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=ATCC 8483",
                "accession": "GCA_025146775.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8393,
                "matched_fragments": 332,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=FDAARGOS_1516",
                "accession": "GCA_020149745.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7457,
                "matched_fragments": 339,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002849695.1",
                "gtdb_species": "s__Bacteroides fragilis_A",
                "ani": 98.1553,
                "matched_fragments": 1346,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 39,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000025985.1",
                "gtdb_species": "s__Bacteroides fragilis",
                "ani": 87.5893,
                "matched_fragments": 1290,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 194,
                "status": "-"
            },
            {
                "accession": "GCF_000210075.1",
                "gtdb_species": "s__Bacteroides xylanisolvens",
                "ani": 79.7814,
                "matched_fragments": 366,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 125,
                "status": "-"
            },
            {
                "accession": "GCF_000011065.1",
                "gtdb_species": "s__Bacteroides thetaiotaomicron",
                "ani": 79.3727,
                "matched_fragments": 383,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "97.24",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 121,
                "status": "-"
            },
            {
                "accession": "GCA_000613465.1",
                "gtdb_species": "s__Bacteroides nordii",
                "ani": 78.9171,
                "matched_fragments": 404,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_002222615.2",
                "gtdb_species": "s__Bacteroides caccae",
                "ani": 78.8535,
                "matched_fragments": 371,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 77,
                "status": "-"
            },
            {
                "accession": "GCF_001314995.1",
                "gtdb_species": "s__Bacteroides ovatus",
                "ani": 78.8162,
                "matched_fragments": 333,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 126,
                "status": "-"
            },
            {
                "accession": "GCA_902362375.1",
                "gtdb_species": "s__Bacteroides sp902362375",
                "ani": 78.7518,
                "matched_fragments": 358,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_000381365.1",
                "gtdb_species": "s__Bacteroides salyersiae",
                "ani": 78.7376,
                "matched_fragments": 386,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "96.77",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.58",
                "num_clustered_genomes": 55,
                "status": "-"
            },
            {
                "accession": "GCA_000613385.1",
                "gtdb_species": "s__Bacteroides acidifaciens",
                "ani": 78.6386,
                "matched_fragments": 309,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.99",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_012113595.1",
                "gtdb_species": "s__Bacteroides sp012113595",
                "ani": 78.6156,
                "matched_fragments": 379,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900130125.1",
                "gtdb_species": "s__Bacteroides congonensis",
                "ani": 78.6056,
                "matched_fragments": 367,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_014750685.1",
                "gtdb_species": "s__Bacteroides sp014750685",
                "ani": 78.4879,
                "matched_fragments": 380,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014385165.1",
                "gtdb_species": "s__Bacteroides sp014385165",
                "ani": 78.4499,
                "matched_fragments": 340,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905207245.1",
                "gtdb_species": "s__Bacteroides sp905207245",
                "ani": 78.2415,
                "matched_fragments": 284,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003464595.1",
                "gtdb_species": "s__Bacteroides intestinalis_A",
                "ani": 78.2251,
                "matched_fragments": 303,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.2143,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900762525.1",
                "gtdb_species": "s__Bacteroides sp900762525",
                "ani": 78.1119,
                "matched_fragments": 327,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900761785.1",
                "gtdb_species": "s__Bacteroides sp900761785",
                "ani": 78.0482,
                "matched_fragments": 347,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000315485.1",
                "gtdb_species": "s__Bacteroides oleiciplenus",
                "ani": 78.0075,
                "matched_fragments": 316,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900556625.1",
                "gtdb_species": "s__Bacteroides sp900556625",
                "ani": 77.7632,
                "matched_fragments": 208,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905215555.1",
                "gtdb_species": "s__Bacteroides sp905215555",
                "ani": 77.1226,
                "matched_fragments": 243,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900544675.1",
                "gtdb_species": "s__Phocaeicola sp900544675",
                "ani": 76.9016,
                "matched_fragments": 99,
                "total_fragments": 1609,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.136,
        "cell_length": 0.217,
        "doubling_h": -0.357,
        "growth_tmp": 36.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 5430286.285,
        "gc_content": 42.36,
        "coding_genes": 4347.273,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 72.714,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides hominis"
    ],
    "_genome_taxon": [
        "Bacteroides",
        "fragilis",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides hominis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Bacteroides",
        "Bacteroides",
        "hominis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}