{
    "type": "genome",
    "identifier": "GCA_022746035.1",
    "organism": "Solobacterium sp.",
    "title": "Solobacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022746035.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301294",
        "wgs_master": "JAIIMR000000000.1",
        "refseq_category": "na",
        "taxid": "2060878",
        "species_taxid": "2060878",
        "organism_name": "Solobacterium sp.",
        "infraspecific_name": "",
        "isolate": "Map_14_012",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274603v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/746/035/GCA_022746035.1_ASM2274603v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Solobacterium sp."
        ],
        "sample_taxid": [
            "2060878"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "1.060 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 3.12,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3711448",
        "Number of Sequences": "1010",
        "Longest Sequences (bp)": "39508",
        "N50 (bp)": "5988",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.7",
        "Number of CDSs": "2965",
        "Average Protein Length": "276.3",
        "Coding Ratio (%)": "66.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Holdemanella biformis",
                "strain": "strain=DSM 3989",
                "accession": "GCA_000156655.1",
                "taxid": 1735,
                "species_taxid": 1735,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 92.1299,
                "matched_fragments": 475,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Holdemanella porci",
                "strain": "strain=LKV-472-APC-3",
                "accession": "GCA_009696075.1",
                "taxid": 2652276,
                "species_taxid": 2652276,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 419,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalitalea cylindroides",
                "strain": "strain=ATCC 27803",
                "accession": "GCA_000469305.1",
                "taxid": 39483,
                "species_taxid": 39483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7291,
                "matched_fragments": 104,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicoccus pleomorphus",
                "strain": "strain=DSM 20574",
                "accession": "GCA_000420345.1",
                "taxid": 1323,
                "species_taxid": 1323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3828,
                "matched_fragments": 60,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicoccus pleomorphus",
                "strain": "strain=NCTC11087",
                "accession": "GCA_900459315.1",
                "taxid": 1323,
                "species_taxid": 1323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2196,
                "matched_fragments": 62,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicoccus acidiformans",
                "strain": "strain=DSM 26963",
                "accession": "GCA_014202635.1",
                "taxid": 915173,
                "species_taxid": 915173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9603,
                "matched_fragments": 59,
                "total_fragments": 730,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 3.12,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900547815.1",
                "gtdb_species": "s__Holdemanella sp900547815",
                "ani": 96.678,
                "matched_fragments": 424,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000156655.1",
                "gtdb_species": "s__Holdemanella biformis",
                "ani": 92.1299,
                "matched_fragments": 475,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.82",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.56",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_900556915.1",
                "gtdb_species": "s__Holdemanella sp900556915",
                "ani": 90.8299,
                "matched_fragments": 290,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.25",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003436425.1",
                "gtdb_species": "s__Holdemanella sp003436425",
                "ani": 89.6434,
                "matched_fragments": 424,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.77",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_009696075.1",
                "gtdb_species": "s__Holdemanella porci",
                "ani": 89.5763,
                "matched_fragments": 419,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.44",
                "min_intra_species_ani": "95.01",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCA_900754615.1",
                "gtdb_species": "s__Holdemanella sp900754615",
                "ani": 88.3238,
                "matched_fragments": 392,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003458715.1",
                "gtdb_species": "s__Holdemanella sp003458715",
                "ani": 88.1651,
                "matched_fragments": 434,
                "total_fragments": 730,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2174775.0,
        "gc_content": 36.77,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__Holdemanella",
        "s__Holdemanella sp900547815"
    ],
    "_genome_taxon": [
        "Solobacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__Holdemanella",
        "s__Holdemanella sp900547815",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Erysipelotrichaceae",
        "Holdemanella",
        "Holdemanella",
        "sp900547815"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}