{
    "type": "genome",
    "identifier": "GCA_022746355.1",
    "organism": "Bacteroides xylanisolvens",
    "title": "Bacteroides xylanisolvens",
    "description": "derived from metagenome; fragmented assembly; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022746355.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301272",
        "wgs_master": "JAIILV000000000.1",
        "refseq_category": "na",
        "taxid": "371601",
        "species_taxid": "371601",
        "organism_name": "Bacteroides xylanisolvens",
        "infraspecific_name": "",
        "isolate": "Map_138_009",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274635v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/746/355/GCA_022746355.1_ASM2274635v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides xylanisolvens"
        ],
        "sample_taxid": [
            "371601"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "1.196 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 78.8,
        "contamination": 5.01,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4119757",
        "Number of Sequences": "1499",
        "Longest Sequences (bp)": "61319",
        "N50 (bp)": "3183",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.4",
        "Number of CDSs": "2008",
        "Average Protein Length": "321.4",
        "Coding Ratio (%)": "47.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacteroides xylanisolvens",
                "strain": "strain=XB1A",
                "accession": "GCA_000210075.1",
                "taxid": 371601,
                "species_taxid": 371601,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.8596,
                "matched_fragments": 444,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=DSM 1896",
                "accession": "GCA_900107475.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.5573,
                "matched_fragments": 438,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=ATCC 8483",
                "accession": "GCA_001314995.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.5508,
                "matched_fragments": 441,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=ATCC 8483",
                "accession": "GCA_025146775.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.538,
                "matched_fragments": 441,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=NCTC11153",
                "accession": "GCA_900445505.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.484,
                "matched_fragments": 446,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=FDAARGOS_1516",
                "accession": "GCA_020149745.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.4724,
                "matched_fragments": 444,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=ATCC 8483",
                "accession": "GCA_002959635.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.4438,
                "matched_fragments": 445,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides luhongzhouii",
                "strain": "strain=HF-5141",
                "accession": "GCA_009193295.2",
                "taxid": 2650158,
                "species_taxid": 2650158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0918,
                "matched_fragments": 406,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_002221665.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9854,
                "matched_fragments": 314,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_016697125.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9554,
                "matched_fragments": 313,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_023277905.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9278,
                "matched_fragments": 315,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caccae",
                "strain": "strain=ATCC 43185",
                "accession": "GCA_025146315.1",
                "taxid": 47678,
                "species_taxid": 47678,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.3325,
                "matched_fragments": 231,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI 5482",
                "accession": "GCA_022453665.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1192,
                "matched_fragments": 271,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 78.8,
            "contamination": 5.01,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCF_000210075.1",
                "gtdb_species": "s__Bacteroides xylanisolvens",
                "ani": 96.8596,
                "matched_fragments": 444,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 125,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001314995.1",
                "gtdb_species": "s__Bacteroides ovatus",
                "ani": 94.5508,
                "matched_fragments": 441,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 126,
                "status": "-"
            },
            {
                "accession": "GCF_009193295.2",
                "gtdb_species": "s__Bacteroides luhongzhouii",
                "ani": 93.0918,
                "matched_fragments": 406,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014334015.1",
                "gtdb_species": "s__Bacteroides intestinigallinarum",
                "ani": 90.949,
                "matched_fragments": 429,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "95.47",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.53",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001688725.2",
                "gtdb_species": "s__Bacteroides caecimuris",
                "ani": 90.8787,
                "matched_fragments": 320,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_902362375.1",
                "gtdb_species": "s__Bacteroides sp902362375",
                "ani": 89.4533,
                "matched_fragments": 419,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_900755095.1",
                "gtdb_species": "s__Bacteroides sp900755095",
                "ani": 89.4399,
                "matched_fragments": 177,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000613385.1",
                "gtdb_species": "s__Bacteroides acidifaciens",
                "ani": 85.2754,
                "matched_fragments": 267,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.99",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 18,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.603,
        "cell_length": 0.332,
        "doubling_h": -0.095,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.75,
        "optimum_ph": 6.8,
        "genome_size": 6067816.318,
        "gc_content": 41.774,
        "coding_genes": 4407.0,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides xylanisolvens"
    ],
    "_genome_taxon": [
        "Bacteroides",
        "xylanisolvens",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides xylanisolvens",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Bacteroides",
        "Bacteroides",
        "xylanisolvens"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}