{
    "type": "genome",
    "identifier": "GCA_022746565.1",
    "organism": "Bacteroides uniformis",
    "title": "Bacteroides uniformis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022746565.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301218",
        "wgs_master": "JAIIJT000000000.1",
        "refseq_category": "na",
        "taxid": "820",
        "species_taxid": "820",
        "organism_name": "Bacteroides uniformis",
        "infraspecific_name": "",
        "isolate": "Map_129_024",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274656v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/746/565/GCA_022746565.1_ASM2274656v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides uniformis"
        ],
        "sample_taxid": [
            "820"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "1.308 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.02,
        "contamination": 9.72,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4543868",
        "Number of Sequences": "318",
        "Longest Sequences (bp)": "92947",
        "N50 (bp)": "32488",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "3383",
        "Average Protein Length": "373.8",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=DSM 6597",
                "accession": "GCA_900107315.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5318,
                "matched_fragments": 1109,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
                "accession": "GCA_025147485.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5199,
                "matched_fragments": 1117,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
                "accession": "GCA_000154205.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.4954,
                "matched_fragments": 1115,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=FDAARGOS_901",
                "accession": "GCA_016117815.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.452,
                "matched_fragments": 1123,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
                "taxid": 2792859,
                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.1117,
                "matched_fragments": 1025,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Bacteroides rodentium",
                "strain": "strain=JCM 16496",
                "accession": "GCA_000614125.1",
                "taxid": 691816,
                "species_taxid": 691816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.7759,
                "matched_fragments": 946,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides muris",
                "strain": "strain=KH365_2",
                "accession": "GCA_024704915.1",
                "taxid": 2937417,
                "species_taxid": 2937417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1698,
                "matched_fragments": 850,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
                "strain": "strain=ATCC 43183",
                "accession": "GCA_025147325.1",
                "taxid": 46506,
                "species_taxid": 46506,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.1703,
                "matched_fragments": 526,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides propionicigenes",
                "strain": "strain=NSJ-90",
                "accession": "GCA_018390535.1",
                "taxid": 2834112,
                "species_taxid": 2834112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0905,
                "matched_fragments": 495,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercorirosoris",
                "strain": "strain=JCM 17103",
                "accession": "GCA_000614165.1",
                "taxid": 871324,
                "species_taxid": 871324,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1569,
                "matched_fragments": 508,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.02,
            "contamination": 9.72,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCF_000154205.1",
                "gtdb_species": "s__Bacteroides uniformis",
                "ani": 98.4758,
                "matched_fragments": 1116,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "95.87",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 301,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000614125.1",
                "gtdb_species": "s__Bacteroides rodentium",
                "ani": 94.7759,
                "matched_fragments": 946,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004793475.1",
                "gtdb_species": "s__Bacteroides sp002491635",
                "ani": 91.9611,
                "matched_fragments": 848,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_905197435.1",
                "gtdb_species": "s__Bacteroides sp905197435",
                "ani": 87.7328,
                "matched_fragments": 643,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000195635.1",
                "gtdb_species": "s__Bacteroides fluxus",
                "ani": 81.6033,
                "matched_fragments": 615,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902388495.1",
                "gtdb_species": "s__Bacteroides sp902388495",
                "ani": 81.5189,
                "matched_fragments": 651,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905203765.1",
                "gtdb_species": "s__Bacteroides sp905203765",
                "ani": 81.0616,
                "matched_fragments": 494,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003438615.1",
                "gtdb_species": "s__Bacteroides sp003545565",
                "ani": 79.9241,
                "matched_fragments": 504,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000186225.1",
                "gtdb_species": "s__Bacteroides helcogenes",
                "ani": 79.4999,
                "matched_fragments": 524,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905198575.1",
                "gtdb_species": "s__Phocaeicola sp905198575",
                "ani": 77.7215,
                "matched_fragments": 75,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.136,
        "cell_length": 0.217,
        "doubling_h": -0.095,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.997,
        "genome_size": 4762432.5,
        "gc_content": 46.358,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides uniformis"
    ],
    "_genome_taxon": [
        "Bacteroides",
        "uniformis",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides uniformis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Bacteroides",
        "Bacteroides",
        "uniformis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}