{
    "type": "genome",
    "identifier": "GCA_022746845.1",
    "organism": "[Ruminococcus] gnavus",
    "title": "[Ruminococcus] gnavus",
    "description": "derived from metagenome; fragmented assembly; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022746845.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301160",
        "wgs_master": "JAIIHN000000000.1",
        "refseq_category": "na",
        "taxid": "33038",
        "species_taxid": "33038",
        "organism_name": "[Ruminococcus] gnavus",
        "infraspecific_name": "",
        "isolate": "Map_121_019",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274684v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/746/845/GCA_022746845.1_ASM2274684v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "[Ruminococcus] gnavus"
        ],
        "sample_taxid": [
            "33038"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.585 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 92.61,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2035015",
        "Number of Sequences": "686",
        "Longest Sequences (bp)": "16795",
        "N50 (bp)": "3624",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "1443",
        "Average Protein Length": "272.4",
        "Coding Ratio (%)": "57.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "[Ruminococcus] gnavus",
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                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.3923,
                "matched_fragments": 289,
                "total_fragments": 312,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.3189,
                "matched_fragments": 292,
                "total_fragments": 312,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_025152275.1",
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                "species_taxid": 33038,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.3175,
                "matched_fragments": 291,
                "total_fragments": 312,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
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            {
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                "ani": 97.2231,
                "matched_fragments": 294,
                "total_fragments": 312,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9667,
                "matched_fragments": 61,
                "total_fragments": 312,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 92.61,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008121495.1",
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                "matched_fragments": 292,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.80",
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                "num_clustered_genomes": 102,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900544395.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001312505.1",
                "gtdb_species": "s__Mediterraneibacter faecis",
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                "num_clustered_genomes": 61,
                "status": "-"
            },
            {
                "accession": "GCA_003480425.1",
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                "num_clustered_genomes": 11,
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            {
                "accession": "GCF_012524165.2",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
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            {
                "accession": "GCA_019119675.1",
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                "accession": "GCA_016295505.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "optimum_tmp": 39.0,
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__Ruminococcus_B",
        "s__Ruminococcus_B gnavus"
    ],
    "_genome_taxon": [
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        "gnavus",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Ruminococcus_B",
        "s__Ruminococcus_B gnavus",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Ruminococcus",
        "B",
        "Ruminococcus",
        "B",
        "gnavus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}