{
    "type": "genome",
    "identifier": "GCA_022747485.1",
    "organism": "Megamonas sp.",
    "title": "Megamonas sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022747485.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301750",
        "wgs_master": "JAIJEE000000000.1",
        "refseq_category": "na",
        "taxid": "2049033",
        "species_taxid": "2049033",
        "organism_name": "Megamonas sp.",
        "infraspecific_name": "",
        "isolate": "Map_39_018",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2274748v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/747/485/GCA_022747485.1_ASM2274748v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Megamonas sp."
        ],
        "sample_taxid": [
            "2049033"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.371 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1304363",
        "Number of Sequences": "601",
        "Longest Sequences (bp)": "20468",
        "N50 (bp)": "2380",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.9",
        "Number of CDSs": "705",
        "Average Protein Length": "300.5",
        "Coding Ratio (%)": "48.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Megamonas funiformis",
                "strain": "strain=YIT 11815",
                "accession": "GCA_000245775.1",
                "taxid": 437897,
                "species_taxid": 437897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.3263,
                "matched_fragments": 122,
                "total_fragments": 124,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Megamonas funiformis",
                "strain": "strain=JCM 14723",
                "accession": "GCA_010669225.1",
                "taxid": 437897,
                "species_taxid": 437897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1899,
                "matched_fragments": 123,
                "total_fragments": 124,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Megamonas hypermegale",
                "strain": "strain=NCTC10570",
                "accession": "GCA_900187035.1",
                "taxid": 158847,
                "species_taxid": 158847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3415,
                "matched_fragments": 106,
                "total_fragments": 124,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megamonas hypermegale",
                "strain": "strain=DSM 1672",
                "accession": "GCA_000423385.1",
                "taxid": 158847,
                "species_taxid": 158847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0958,
                "matched_fragments": 107,
                "total_fragments": 124,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010669225.1",
                "gtdb_species": "s__Megamonas funiformis",
                "ani": 99.1899,
                "matched_fragments": 123,
                "total_fragments": 124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900187035.1",
                "gtdb_species": "s__Megamonas hypermegale",
                "ani": 83.3866,
                "matched_fragments": 105,
                "total_fragments": 124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002314325.1",
                "gtdb_species": "s__Megamonas hypermegale_A",
                "ani": 81.6656,
                "matched_fragments": 54,
                "total_fragments": 124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.524,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.25,
        "optimum_ph": 7.0,
        "genome_size": 2357791.555,
        "gc_content": 32.155,
        "coding_genes": 2078.0,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 55.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Megamonas",
        "s__Megamonas funiformis"
    ],
    "_genome_taxon": [
        "Megamonas",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Megamonas",
        "s__Megamonas funiformis",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Selenomonadales",
        "Selenomonadaceae",
        "Megamonas",
        "Megamonas",
        "funiformis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}