{ "type": "genome", "identifier": "GCA_022749235.1", "organism": "Streptococcus lutetiensis", "title": "Streptococcus lutetiensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022749235.1", "bioproject": "PRJNA747761", "biosample": "SAMN20301519", "wgs_master": "JAIIVI000000000.1", "refseq_category": "na", "taxid": "150055", "species_taxid": "150055", "organism_name": "Streptococcus lutetiensis", "infraspecific_name": "", "isolate": "Map_189_018", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2274923v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "GCF_022749235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/749/235/GCA_022749235.1_ASM2274923v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus lutetiensis" ], "sample_taxid": [ "150055" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mozambique" ], "sample_host_location_id": [], "data_size": "0.447 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.25, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1568145", "Number of Sequences": "312", "Longest Sequences (bp)": "26910", "N50 (bp)": "7388", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.7", "Number of CDSs": "1367", "Average Protein Length": "275.1", "Coding Ratio (%)": "72.0", "Number of rRNAs": "0", "Number of tRNAs": "15", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1018", "accession": "GCA_016403165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 99.4929, "matched_fragments": 363, "total_fragments": 367, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 99.4487, "matched_fragments": 361, "total_fragments": 367, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 99.3819, "matched_fragments": 361, "total_fragments": 367, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 94.2389, "matched_fragments": 338, "total_fragments": 367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 94.1835, "matched_fragments": 340, "total_fragments": 367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=ATCC 9812", "accession": "GCA_000187265.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 87.848, "matched_fragments": 312, "total_fragments": 367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=NCTC12969", "accession": "GCA_900459295.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 87.7308, "matched_fragments": 319, "total_fragments": 367, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.25, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900475675.1", "gtdb_species": "s__Streptococcus lutetiensis", "ani": 99.3819, "matched_fragments": 361, "total_fragments": 367, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 50, "status": "conclusive" }, { "accession": "GCF_000154985.1", "gtdb_species": "s__Streptococcus infantarius", "ani": 94.1835, "matched_fragments": 340, "total_fragments": 367, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_900101445.1", "gtdb_species": "s__Streptococcus equinus_B", "ani": 93.4792, "matched_fragments": 341, "total_fragments": 367, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_900104225.1", "gtdb_species": "s__Streptococcus equinus_D", "ani": 88.8271, "matched_fragments": 327, "total_fragments": 367, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016461705.1", "gtdb_species": "s__Streptococcus vicugnae", "ani": 88.6966, "matched_fragments": 335, "total_fragments": 367, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000187265.1", "gtdb_species": "s__Streptococcus equinus", "ani": 87.848, "matched_fragments": 312, "total_fragments": 367, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 42, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.89, "genome_size": 1914457.333, "gc_content": 37.7, "coding_genes": 1743.25, "rRNA16S_genes": 6.0, "tRNA_genes": 67.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.943, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.056, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Streptococcaceae", "g__Streptococcus", "s__Streptococcus lutetiensis" ], "_genome_taxon": [ "Streptococcus", "lutetiensis", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Streptococcaceae", "g__Streptococcus", "s__Streptococcus lutetiensis", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Streptococcaceae", "Streptococcus", "Streptococcus", "lutetiensis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }