{
    "tc_result": [
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=ATCC 29930",
            "accession": "GCA_002950395.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 98.5149,
            "matched_fragments": 961,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=DMB SH130",
            "accession": "GCA_003572535.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
            "validated": true,
            "ani": 98.4915,
            "matched_fragments": 808,
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=NCTC12984",
            "accession": "GCA_900457155.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 98.4742,
            "matched_fragments": 956,
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            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=FDAARGOS_1139",
            "accession": "GCA_016726285.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
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            "ani": 98.4579,
            "matched_fragments": 936,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=NCTC12985",
            "accession": "GCA_900457095.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
            "validated": true,
            "ani": 98.4368,
            "matched_fragments": 938,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella flexneri 2a",
            "strain": "strain=ATCC 29903",
            "accession": "GCA_002950215.1",
            "taxid": 42897,
            "species_taxid": 623,
            "relation_to_type": "type",
            "validated": true,
            "ani": 98.1927,
            "matched_fragments": 948,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=NCTC4837",
            "accession": "GCA_900457215.1",
            "taxid": 622,
            "species_taxid": 622,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 97.3541,
            "matched_fragments": 879,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=ATCC 13313",
            "accession": "GCA_002949675.1",
            "taxid": 622,
            "species_taxid": 622,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 97.3191,
            "matched_fragments": 883,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_024519395.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
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            "ani": 97.1072,
            "matched_fragments": 960,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=ATCC 11775",
            "accession": "GCA_003697165.2",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 97.095,
            "matched_fragments": 967,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_000690815.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 97.0909,
            "matched_fragments": 965,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=ATCC 11775",
            "accession": "GCA_000734955.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 97.0604,
            "matched_fragments": 951,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=NBRC 107761",
            "accession": "GCA_000759775.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
            "validated": true,
            "ani": 90.4841,
            "matched_fragments": 815,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=DSM 17582",
            "accession": "GCA_022833075.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
            "validated": true,
            "ani": 90.412,
            "matched_fragments": 866,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Pseudocitrobacter corydidari",
            "strain": "",
            "accession": "GCA_021172065.1",
            "taxid": 2891570,
            "species_taxid": 2891570,
            "relation_to_type": "type",
            "validated": true,
            "ani": 81.7813,
            "matched_fragments": 654,
            "total_fragments": 1034,
            "ani_threshold": 95,
            "status": "below_threshold"
        }
    ],
    "cc_result": {
        "completeness": 81.42,
        "contamination": 5.59,
        "strain_heterogeneity": 100.0
    },
    "gtdb_result": [
        {
            "accession": "GCF_003697165.2",
            "gtdb_species": "s__Escherichia coli",
            "ani": 97.095,
            "matched_fragments": 967,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.07",
            "min_intra_species_ani": "95.57",
            "mean_intra_species_af": "0.85",
            "min_intra_species_af": "0.72",
            "num_clustered_genomes": 26859,
            "status": "conclusive"
        },
        {
            "accession": "GCF_002965065.1",
            "gtdb_species": "s__Escherichia sp002965065",
            "ani": 94.8209,
            "matched_fragments": 837,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_004211955.1",
            "gtdb_species": "s__Escherichia sp004211955",
            "ani": 93.1879,
            "matched_fragments": 941,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "100.00",
            "min_intra_species_ani": "100.00",
            "mean_intra_species_af": "1.00",
            "min_intra_species_af": "1.00",
            "num_clustered_genomes": 2,
            "status": "-"
        },
        {
            "accession": "GCF_902498915.1",
            "gtdb_species": "s__Escherichia ruysiae",
            "ani": 93.0784,
            "matched_fragments": 937,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.82",
            "min_intra_species_ani": "96.45",
            "mean_intra_species_af": "0.94",
            "min_intra_species_af": "0.86",
            "num_clustered_genomes": 36,
            "status": "-"
        },
        {
            "accession": "GCF_005843885.1",
            "gtdb_species": "s__Escherichia sp005843885",
            "ani": 92.9017,
            "matched_fragments": 949,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "96.83",
            "min_intra_species_ani": "95.39",
            "mean_intra_species_af": "0.87",
            "min_intra_species_af": "0.80",
            "num_clustered_genomes": 37,
            "status": "-"
        },
        {
            "accession": "GCF_011881725.1",
            "gtdb_species": "s__Escherichia coli_E",
            "ani": 92.5125,
            "matched_fragments": 889,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_001660175.1",
            "gtdb_species": "s__Escherichia sp001660175",
            "ani": 92.0957,
            "matched_fragments": 951,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.53",
            "min_intra_species_ani": "99.22",
            "mean_intra_species_af": "0.94",
            "min_intra_species_af": "0.92",
            "num_clustered_genomes": 3,
            "status": "-"
        },
        {
            "accession": "GCF_002900365.1",
            "gtdb_species": "s__Escherichia marmotae",
            "ani": 91.2668,
            "matched_fragments": 912,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.02",
            "min_intra_species_ani": "98.77",
            "mean_intra_species_af": "0.90",
            "min_intra_species_af": "0.85",
            "num_clustered_genomes": 82,
            "status": "-"
        },
        {
            "accession": "GCF_000026225.1",
            "gtdb_species": "s__Escherichia fergusonii",
            "ani": 90.964,
            "matched_fragments": 798,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.80",
            "min_intra_species_ani": "98.39",
            "mean_intra_species_af": "0.93",
            "min_intra_species_af": "0.89",
            "num_clustered_genomes": 77,
            "status": "-"
        },
        {
            "accession": "GCF_000759775.1",
            "gtdb_species": "s__Escherichia albertii",
            "ani": 90.4727,
            "matched_fragments": 816,
            "total_fragments": 1034,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.47",
            "min_intra_species_ani": "97.95",
            "mean_intra_species_af": "0.90",
            "min_intra_species_af": "0.82",
            "num_clustered_genomes": 107,
            "status": "-"
        }
    ]
}