{
    "type": "genome",
    "identifier": "GCA_022753065.1",
    "organism": "Lactobacillus jensenii",
    "title": "Lactobacillus jensenii",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Massachusetts General Hospital",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022753065.1",
        "bioproject": "PRJNA799445",
        "biosample": "SAMN25166339",
        "wgs_master": "JALBMH000000000.1",
        "refseq_category": "na",
        "taxid": "109790",
        "species_taxid": "109790",
        "organism_name": "Lactobacillus jensenii",
        "infraspecific_name": "",
        "isolate": "MHKL_MAG_00037",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/29",
        "asm_name": "ASM2275306v1",
        "submitter": "Massachusetts General Hospital",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/753/065/GCA_022753065.1_ASM2275306v1",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-29",
    "dateModified": "2022-03-29",
    "datePublished": "2022-03-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus jensenii"
        ],
        "sample_taxid": [
            "109790"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.215 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "765282",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "88851",
        "N50 (bp)": "45698",
        "Gap Ratio (%)": "0.003920",
        "GCcontent (%)": "34.1",
        "Number of CDSs": "733",
        "Average Protein Length": "316.7",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactobacillus jensenii",
                "strain": "strain=ATCC 25258",
                "accession": "GCA_018094625.1",
                "taxid": 109790,
                "species_taxid": 109790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9503,
                "matched_fragments": 220,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus jensenii",
                "strain": "strain=DSM 20557",
                "accession": "GCA_001436455.1",
                "taxid": 109790,
                "species_taxid": 109790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8339,
                "matched_fragments": 212,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus mulieris",
                "strain": "strain=c10Ua161M",
                "accession": "GCA_007095465.1",
                "taxid": 2508708,
                "species_taxid": 2508708,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1234,
                "matched_fragments": 194,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus psittaci",
                "strain": "strain=DSM 15354",
                "accession": "GCA_001435695.1",
                "taxid": 116089,
                "species_taxid": 116089,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4753,
                "matched_fragments": 155,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus psittaci",
                "strain": "strain=DSM 15354",
                "accession": "GCA_000425905.1",
                "taxid": 116089,
                "species_taxid": 116089,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2101,
                "matched_fragments": 164,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus amylolyticus",
                "strain": "strain=DSM 11664",
                "accession": "GCA_004354545.1",
                "taxid": 83683,
                "species_taxid": 83683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8167,
                "matched_fragments": 58,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus amylolyticus",
                "strain": "strain=DSM 11664",
                "accession": "GCA_001435665.1",
                "taxid": 83683,
                "species_taxid": 83683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7157,
                "matched_fragments": 58,
                "total_fragments": 242,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 50.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001436455.1",
                "gtdb_species": "s__Lactobacillus jensenii",
                "ani": 99.8339,
                "matched_fragments": 212,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 31,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007095465.1",
                "gtdb_species": "s__Lactobacillus mulieris",
                "ani": 89.1234,
                "matched_fragments": 194,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_000425905.1",
                "gtdb_species": "s__Lactobacillus psittaci",
                "ani": 88.2101,
                "matched_fragments": 164,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000160855.1",
                "gtdb_species": "s__Lactobacillus helveticus",
                "ani": 79.7292,
                "matched_fragments": 62,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "96.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 146,
                "status": "-"
            },
            {
                "accession": "GCF_001434335.1",
                "gtdb_species": "s__Lactobacillus kalixensis",
                "ani": 79.1835,
                "matched_fragments": 59,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004009905.1",
                "gtdb_species": "s__Lactobacillus xujianguonis",
                "ani": 79.1506,
                "matched_fragments": 59,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000178475.1",
                "gtdb_species": "s__Lactobacillus amylolyticus",
                "ani": 78.8549,
                "matched_fragments": 59,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001436695.1",
                "gtdb_species": "s__Lactobacillus taiwanensis",
                "ani": 78.6332,
                "matched_fragments": 54,
                "total_fragments": 242,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 31,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.301,
        "doubling_h": -0.086,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.027,
        "genome_size": 1666778.211,
        "gc_content": 34.278,
        "coding_genes": 1509.667,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 58.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.155,
        "anaerobic_respiration": 0.175,
        "aerobic_respiration": 0.668,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus jensenii"
    ],
    "_genome_taxon": [
        "Lactobacillus",
        "jensenii",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus jensenii",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Lactobacillus",
        "Lactobacillus",
        "jensenii"
    ],
    "_meo": [
        {
            "id": "MEO_0000523",
            "label": "vagina"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}