{
    "type": "genome",
    "identifier": "GCA_022754185.1",
    "organism": "Lactobacillus crispatus",
    "title": "Lactobacillus crispatus",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Massachusetts General Hospital",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022754185.1",
        "bioproject": "PRJNA799626",
        "biosample": "SAMN25183799",
        "wgs_master": "JALBJR000000000.1",
        "refseq_category": "na",
        "taxid": "47770",
        "species_taxid": "47770",
        "organism_name": "Lactobacillus crispatus",
        "infraspecific_name": "",
        "isolate": "MHKL_MAG_00190",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/29",
        "asm_name": "ASM2275418v1",
        "submitter": "Massachusetts General Hospital",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/754/185/GCA_022754185.1_ASM2275418v1",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-29",
    "dateModified": "2022-03-29",
    "datePublished": "2022-03-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus crispatus"
        ],
        "sample_taxid": [
            "47770"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.217 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 25.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "762816",
        "Number of Sequences": "48",
        "Longest Sequences (bp)": "54252",
        "N50 (bp)": "25505",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.1",
        "Number of CDSs": "815",
        "Average Protein Length": "275.6",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=ATCC 33820",
                "accession": "GCA_002088015.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.6061,
                "matched_fragments": 164,
                "total_fragments": 230,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=NCK2488",
                "accession": "GCA_008694755.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5293,
                "matched_fragments": 162,
                "total_fragments": 230,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=DSM 20584",
                "accession": "GCA_001434005.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4173,
                "matched_fragments": 164,
                "total_fragments": 230,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=ATCC 33820",
                "accession": "GCA_018987235.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.1888,
                "matched_fragments": 175,
                "total_fragments": 230,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6853,
                "matched_fragments": 119,
                "total_fragments": 230,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus acidophilus",
                "strain": "strain=ATCC 4356",
                "accession": "GCA_000786395.1",
                "taxid": 1579,
                "species_taxid": 1579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5248,
                "matched_fragments": 111,
                "total_fragments": 230,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 25.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018987235.1",
                "gtdb_species": "s__Lactobacillus crispatus",
                "ani": 97.1888,
                "matched_fragments": 175,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "96.25",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 161,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002706375.1",
                "gtdb_species": "s__Lactobacillus amylovorus",
                "ani": 83.4898,
                "matched_fragments": 121,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_000615285.1",
                "gtdb_species": "s__Lactobacillus kitasatonis",
                "ani": 83.0315,
                "matched_fragments": 125,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001434975.1",
                "gtdb_species": "s__Lactobacillus gallinarum",
                "ani": 82.8463,
                "matched_fragments": 118,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_000160855.1",
                "gtdb_species": "s__Lactobacillus helveticus",
                "ani": 82.1425,
                "matched_fragments": 114,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "96.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 146,
                "status": "-"
            },
            {
                "accession": "GCF_001436305.1",
                "gtdb_species": "s__Lactobacillus ultunensis",
                "ani": 81.6853,
                "matched_fragments": 119,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001591845.1",
                "gtdb_species": "s__Lactobacillus acidophilus",
                "ani": 81.57,
                "matched_fragments": 111,
                "total_fragments": 230,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 59,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.361,
        "doubling_h": -0.086,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.027,
        "genome_size": 2217171.864,
        "gc_content": 36.743,
        "coding_genes": 2024.0,
        "rRNA16S_genes": 5.074,
        "tRNA_genes": 63.614,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus crispatus"
    ],
    "_genome_taxon": [
        "Lactobacillus",
        "crispatus",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus crispatus",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Lactobacillus",
        "Lactobacillus",
        "crispatus"
    ],
    "_meo": [
        {
            "id": "MEO_0000523",
            "label": "vagina"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}