# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_50	LOCUS_00490	sequence001:39050..39751(+)	partial			WP_013399434.1	anchored repeat-type ABC transporter ATP-binding subunit	81.1	72.5	37.2
MGA_71	LOCUS_00700	sequence001:61943..62806(+)	partial			WP_003549642.1	helix-turn-helix transcriptional regulator	70.4	73.2	24.9
MGA_81	LOCUS_00800	sequence001:74457..75896(+)	partial			WP_011254051.1	CAP domain-containing protein	74.1	84.7	48.7
MGA_85	LOCUS_00840	sequence001:78097..78381(-)	partial			WP_010870381.1	HIT family protein	74.5	54.3	40.8
MGA_86	LOCUS_00850	sequence001:78470..79240(-)	partial			WP_012583055.1	zinc-dependent alcohol dehydrogenase family protein	78.1	63.0	29.2
MGA_91	LOCUS_00900	sequence001:83322..84470(-)	partial			WP_000701298.1	peptidase domain-containing ABC transporter	94.8	52.4	27.4
MGA_93	LOCUS_00920	sequence001:85431..85748(+)	frameshift		85742	WP_011861371.1	relaxase/mobilization nuclease domain-containing protein	95.2	22.6	91.0
MGA_94	LOCUS_00930	sequence001:85738..86319(+)	frameshift		85742	WP_011861371.1	relaxase/mobilization nuclease domain-containing protein	99.0	43.1	80.1
MGA_97	LOCUS_00960	sequence001:87366..87536(-)	internal_stop_codon	87366..87368(-)		WP_011861367.1	DEAD/DEAH box helicase family protein	100.0	1.9	94.6
MGA_106	LOCUS_01050	sequence001:95423..95845(+)	frameshift,internal_stop_codon	95356..95358(+),95275..95277(+)	95394,95349	WP_141741171.1	IS3 family transposase	69.3	20.1	62.9
MGA_129	LOCUS_01280	sequence001:118714..119610(-)	frameshift		119795	WP_002356719.1	nucleobase:cation symporter-2 family protein	97.0	65.0	45.3
MGA_130	LOCUS_01290	sequence001:119772..120053(-)	frameshift		119795	WP_002356719.1	nucleobase:cation symporter-2 family protein	87.1	18.3	54.3
MGA_163	LOCUS_01620	sequence001:155217..155597(+)	partial			WP_003548701.1	helix-turn-helix transcriptional regulator	93.7	43.9	39.8
MGA_165	LOCUS_01640	sequence001:156963..157262(+)	internal_stop_codon	157260..157262(+),157443..157445(+)		WP_003549316.1	phage integrase SAM-like domain-containing protein	100.0	24.1	90.9
MGA_166	LOCUS_01650	sequence001:157518..157724(+)	internal_stop_codon	157722..157724(+),157260..157262(+),157443..157445(+)		WP_003549316.1	phage integrase SAM-like domain-containing protein	100.0	16.5	92.6
MGA_200	LOCUS_01990	sequence002:4509..5225(+)	partial			WP_000080028.1	response regulator	68.9	67.5	33.9
MGA_205	LOCUS_02040	sequence002:8142..8651(-)	partial			WP_011254204.1	hypothetical protein	74.0	75.8	40.0
MGA_229	LOCUS_02280	sequence002:33814..34245(-)	partial			WP_011222015.1	AAA family ATPase	100.0	54.1	56.2
MGA_233	LOCUS_02320	sequence002:36392..37408(+)	partial			WP_004791496.1	HesA/MoeB/ThiF family protein	34.3	39.1	35.3
MGA_244	LOCUS_02430	sequence002:49255..49698(+)	partial			WP_004080548.1	PAS domain-containing protein	83.0	63.6	28.2
MGA_278	LOCUS_02770	sequence002:83042..83977(+)	partial			WP_003550055.1	DNA/RNA non-specific endonuclease	67.2	73.3	53.3
MGA_288	LOCUS_02870	sequence003:1..1226(+)	partial			WP_011254583.1	glycoside hydrolase family 31 protein	97.5	51.9	65.1
MGA_307	LOCUS_03060	sequence003:20530..25722(+)	partial			WP_003549917.1	type I pullulanase	55.8	81.9	47.8
MGA_308	LOCUS_03070	sequence003:26000..26911(+)	partial			WP_003234757.1	sodium ABC transporter ATP-binding protein NatA	67.7	83.7	42.0
MGA_319	LOCUS_03180	sequence003:37931..38434(+)	partial			WP_045861227.1	restriction endonuclease subunit S	77.8	27.0	52.3
MGA_321	LOCUS_03200	sequence003:38619..39161(-)	partial			WP_138985883.1	restriction endonuclease subunit S	91.7	37.2	26.6
MGA_337	LOCUS_03350	sequence004:1..709(+)	frameshift		664	WP_003546586.1	excinuclease ABC subunit UvrB	93.6	32.2	76.4
MGA_338	LOCUS_03360	sequence004:690..1304(+)	frameshift		664	WP_003546586.1	excinuclease ABC subunit UvrB	99.5	29.9	73.5
MGA_339	LOCUS_03370	sequence004:1332..1991(+)	frameshift		1976	WP_003546588.1	excinuclease ABC subunit UvrA	98.2	22.7	77.2
MGA_340	LOCUS_03380	sequence004:1988..4123(+)	frameshift		1985	WP_003546588.1	excinuclease ABC subunit UvrA	99.7	75.9	70.1
MGA_355	LOCUS_03530	sequence004:19828..20349(+)	partial			WP_002385065.1	folate family ECF transporter S component	73.4	70.3	38.8
MGA_367	LOCUS_03650	sequence004:33352..34329(+)	frameshift		34296	WP_003546460.1	hydroxymethylglutaryl-CoA synthase	96.9	81.4	63.2
MGA_368	LOCUS_03660	sequence004:34373..34522(+)	frameshift		34296	WP_003546460.1	hydroxymethylglutaryl-CoA synthase	89.8	11.4	52.3
MGA_385	LOCUS_03830	sequence004:52471..53082(+)	partial			WP_003546273.1	glycoside hydrolase family 73 protein	75.9	71.6	56.5
MGA_406	LOCUS_04020	sequence005:20238..21242(-)	frameshift		21256	WP_003546511.1	AI-2E family transporter	99.7	84.3	53.2
MGA_419	LOCUS_04150	sequence005:30446..30871(+)	partial			WP_003703249.1	type I 3-dehydroquinate dehydratase	80.9	45.6	27.6
MGA_424	LOCUS_04200	sequence005:35414..36076(+)	partial			WP_003549662.1	cytochrome C5	84.5	56.9	37.1
MGA_469	LOCUS_04630	sequence006:31446..31634(+)	partial			WP_011860793.1	relaxase/mobilization nuclease domain-containing protein	87.1	13.1	53.4
MGA_473	LOCUS_04670	sequence006:35812..>36518(-)	partial			WP_015943877.1	HAMP domain-containing sensor histidine kinase	100.0	74.7	40.2
MGA_483	LOCUS_04760	sequence007:10316..11131(-)	frameshift		11159	WP_011254144.1	DNA mismatch repair protein MutS	99.3	32.5	71.7
MGA_484	LOCUS_04770	sequence007:11124..12896(-)	frameshift		11165	WP_011254144.1	DNA mismatch repair protein MutS	96.9	66.8	69.2
MGA_493	LOCUS_04860	sequence007:20309..21541(-)	frameshift		21573,21582	WP_011254441.1	carbamoyl-phosphate synthase large subunit	99.8	39.2	64.9
MGA_494	LOCUS_04870	sequence007:21550..23478(-)	frameshift		21573,21591	WP_011254441.1	carbamoyl-phosphate synthase large subunit	98.0	59.2	83.9
MGA_500	LOCUS_04930	sequence007:28423..>29166(-)	partial			WP_002288985.1	MFS transporter	93.9	57.4	56.5
MGA_502	LOCUS_04950	sequence008:691..927(+)	frameshift		676	WP_003546822.1	DUF1831 domain-containing protein	96.2	66.4	70.7
MGA_532	LOCUS_05230	sequence009:7787..7960(+)	frameshift		7945	WP_011254404.1	transcriptional repressor LexA	96.5	26.4	60.0
MGA_553	LOCUS_05440	sequence010:4283..9517(+)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	57.2	30.7	24.4
MGA_554	LOCUS_05450	sequence010:9759..10019(+)	partial			WP_011016071.1	carboxylating nicotinate-nucleotide diphosphorylase	94.2	28.3	53.1
MGA_555	LOCUS_05460	sequence010:10291..12021(-)	partial			WP_012870273.1	type I restriction endonuclease subunit R	91.7	49.9	58.6
MGA_576	LOCUS_05650	sequence011:11250..11441(-)	partial			WP_011254154.1	TIGR01906 family membrane protein	93.7	29.2	55.9
MGA_584	LOCUS_05730	sequence011:18798..19127(-)	partial			WP_003549212.1	hypothetical protein	84.4	74.6	44.1
MGA_606	LOCUS_05930	sequence012:18395..18700(+)	partial			WP_011861368.1	single-strand DNA-binding protein	95.0	44.3	53.6
MGA_619	LOCUS_06060	sequence013:13958..14275(-)	partial			WP_000580488.1	XRE family transcriptional regulator	96.2	43.9	34.9
MGA_620	LOCUS_06070	sequence013:14318..15037(-)	partial			WP_010905339.1	S24 family peptidase	66.5	56.1	35.8
MGA_626	LOCUS_06130	sequence013:17285..17704(+)	partial			WP_013389859.1	phage antirepressor Ant	75.5	40.5	48.6
MGA_627	LOCUS_06140	sequence013:17614..18114(+)	partial			WP_000227333.1	polymorphic toxin type 50 domain-containing protein	83.7	31.0	30.9
MGA_646	LOCUS_06310	sequence014:15795..16085(+)	frameshift		15774	WP_003546703.1	LTA synthase family protein	64.6	8.6	58.1
MGA_736	LOCUS_07140	sequence020:12317..13348(-)	partial			WP_011101574.1	S41 family peptidase	98.3	69.5	36.5
MGA_744	LOCUS_07210	sequence021:9852..10910(+)	frameshift		10904	WP_011254366.1	helicase-exonuclease AddAB subunit AddA	98.3	28.5	44.4
MGA_745	LOCUS_07220	sequence021:10960..12390(+)	frameshift,internal_stop_codon	12388..12390(+)	10904	WP_011254366.1	helicase-exonuclease AddAB subunit AddA	99.8	39.0	54.3
MGA_747	LOCUS_07230	sequence022:1..2018(+)	partial			WP_011254411.1	chromosome segregation protein SMC	100.0	56.4	47.6
MGA_763	LOCUS_07380	sequence023:4099..4770(-)	partial			WP_003548465.1	L,D-transpeptidase	72.2	70.7	61.7
MGA_778	LOCUS_07510	sequence024:4066..10956(-)	partial			WP_116440506.1	InlB B-repeat-containing protein	34.7	28.9	30.1
MGA_784	LOCUS_07550	sequence025:3115..3522(+)	frameshift		3507	WP_003548349.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	97.0	47.5	69.5
MGA_785	LOCUS_07560	sequence025:3717..3953(+)	frameshift		3510	WP_003548349.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	96.2	27.2	62.7
MGA_791	LOCUS_07620	sequence025:9760..10164(+)	partial			WP_075917325.1	translation initiation factor IF-3	94.8	72.3	75.0
MGA_813	LOCUS_07820	sequence027:1..993(+)	partial			WP_011254257.1	cell division protein FtsA	97.0	71.6	55.6
MGA_833	LOCUS_08010	sequence028:9892..10386(-)	frameshift		10430	WP_003547621.1	glycine--tRNA ligase subunit alpha	98.2	52.8	83.2
MGA_834	LOCUS_08020	sequence028:10392..10814(-)	frameshift		10436	WP_003547621.1	glycine--tRNA ligase subunit alpha	90.7	41.6	90.6
MGA_845	LOCUS_08110	sequence030:48..395(+)	partial			WP_003546630.1	ABC transporter substrate-binding protein	99.1	31.9	69.3
MGA_848	LOCUS_08140	sequence030:2265..2468(+)	frameshift		2432	WP_003546635.1	phosphoglucosamine mutase	83.6	12.4	87.5
MGA_869	LOCUS_08340	sequence031:9850..10449(+)	frameshift		10377	WP_011254182.1	MFS transporter	98.5	41.6	63.5
MGA_877	LOCUS_08410	sequence032:9018..9518(+)	partial			WP_153437736.1	ISNCY family transposase	63.3	21.9	40.0
MGA_879	LOCUS_08430	sequence033:151..1653(+)	partial			WP_010989477.1	helix-turn-helix domain-containing protein	44.8	44.7	22.9
MGA_914	LOCUS_08720	sequence036:5075..5797(-)	frameshift		5805	WP_003242595.1	RNA polymerase factor sigma-54	92.1	51.6	32.6
MGA_915	LOCUS_08730	sequence036:5770..6354(-)	frameshift,internal_stop_codon	5806..5808(-)	5826	WP_010942532.1	RNA polymerase factor sigma-54	51.5	20.8	33.0
MGA_935	LOCUS_08910	sequence038:7653..>8287(-)	partial			WP_002680024.1	recombinase family protein	62.4	21.4	41.2
MGA_948	LOCUS_09020	sequence040:3988..4299(+)	frameshift		4269	WP_011254199.1	phosphoketolase family protein	90.3	11.6	87.1
MGA_958	LOCUS_09110	sequence041:6338..6580(-)	frameshift		6651	WP_002262593.1	acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein	83.8	20.1	38.2
MGA_959	LOCUS_09120	sequence041:6643..7023(-)	frameshift,internal_stop_codon	7048..7050(-)	6651	WP_002262593.1	acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein	98.4	35.4	45.2
MGA_967	LOCUS_09190	sequence042:6445..>7381(-)	partial			WP_011254361.1	PBP1A family penicillin-binding protein	77.8	30.7	64.6
MGA_971	LOCUS_09230	sequence043:1351..1965(+)	frameshift		1148,1343	WP_000837499.1	XRE/MutR family transcriptional regulator	99.5	71.8	73.5
MGA_972	LOCUS_09240	sequence043:2019..2354(-)	internal_stop_codon	2388..2390(-),2487..2489(-)		WP_168549381.1	SAG1250 family conjugative relaxase	98.2	17.6	67.9
MGA_973	LOCUS_09250	sequence043:2487..2759(-)	internal_stop_codon	2388..2390(-),2487..2489(-)		WP_012775543.1	SAG1250 family conjugative relaxase	96.7	14.0	87.4
MGA_978	LOCUS_09300	sequence043:5572..6024(+)	internal_stop_codon	6022..6024(+)		WP_002680630.1	ABC transporter ATP-binding protein	100.0	32.3	60.5
MGA_979	LOCUS_09310	sequence043:6070..6516(+)	internal_stop_codon	6514..6516(+),6022..6024(+)		WP_002680630.1	ABC transporter ATP-binding protein	98.6	31.1	58.2
MGA_980	LOCUS_09320	sequence043:6598..6840(+)	frameshift,internal_stop_codon	6514..6516(+)	6828	WP_002680630.1	ABC transporter ATP-binding protein	96.2	16.4	70.1
MGA_991	LOCUS_09420	sequence045:1481..2569(-)	partial			WP_000873739.1	M15 family metallopeptidase	36.2	48.0	30.5
MGA_1001	LOCUS_09500	sequence046:2429..3373(-)	frameshift		3441	WP_003547533.1	class I SAM-dependent RNA methyltransferase	100.0	84.0	73.9
MGA_1002	LOCUS_09510	sequence046:3427..3564(-)	frameshift		3441	WP_003547533.1	class I SAM-dependent RNA methyltransferase	80.0	9.6	72.2
MGA_1006	LOCUS_09550	sequence046:5660..5872(+)	frameshift		5869	WP_011254361.1	PBP1A family penicillin-binding protein	94.3	8.5	37.9
MGA_1012	LOCUS_09600	sequence047:4548..4862(+)	partial			WP_002680014.1	DUF3847 domain-containing protein	52.9	67.5	55.4
MGA_1013	LOCUS_09610	sequence047:5176..6816(+)	partial			WP_011241757.1	MobQ family relaxase	59.3	47.4	35.4
MGA_1017	LOCUS_09650	sequence048:4552..4749(-)	frameshift		4835	WP_011254255.1	cell division protein FtsL	100.0	54.2	60.0
MGA_1020	LOCUS_09680	sequence049:1..1501(+)	partial			WP_003549179.1	alanine--tRNA ligase	99.6	56.5	68.0
MGA_1029	LOCUS_09750	sequence050:322..1113(+)	frameshift		271	WP_003546959.1	phosphopyruvate hydratase	100.0	61.4	89.7
MGA_1030	LOCUS_09760	sequence050:1250..3121(+)	partial			WP_003549917.1	type I pullulanase	96.3	51.2	55.8
MGA_1046	LOCUS_09890	sequence053:1..880(+)	partial			WP_003546862.1	elongation factor Tu	100.0	73.7	87.7
MGA_1057	LOCUS_09990	sequence055:1..1129(+)	partial			WP_003547478.1	DNA topoisomerase IV subunit A	96.5	44.2	60.2
MGA_1074	LOCUS_10130	sequence057:4420..>5436(-)	partial			WP_002263274.1	amidase	95.9	67.9	40.5
MGA_1096	LOCUS_10310	sequence060:4063..>4743(-)	partial			WP_003546755.1	replication-associated recombination protein A	99.1	51.0	58.0
MGA_1122	LOCUS_10500	sequence066:2397..2591(+)	internal_stop_codon	2349..2351(+)		WP_002665927.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	96.9	68.9	69.4
MGA_1128	LOCUS_10530	sequence068:1..544(+)	partial			WP_003549917.1	type I pullulanase	99.4	15.1	44.1
MGA_1144	LOCUS_10640	sequence072:31..657(-)	partial			WP_003547719.1	YitT family protein	99.0	70.5	65.5
MGA_1147	LOCUS_10670	sequence072:3276..>3818(-)	partial			WP_003547037.1	histidine--tRNA ligase	97.2	40.9	60.6
MGA_1151	LOCUS_10710	sequence073:2015..2599(+)	partial			WP_003563024.1	hydrolase	45.9	39.0	74.2
MGA_1159	LOCUS_10770	sequence075:1..661(+)	partial			WP_011254246.1	F0F1 ATP synthase subunit alpha	98.2	42.7	79.1
MGA_1161	LOCUS_10790	sequence075:1629..2165(+)	frameshift		2111	WP_011254247.1	F0F1 ATP synthase subunit beta	94.9	35.3	68.6
MGA_1162	LOCUS_10800	sequence075:2162..3109(+)	frameshift		2114	WP_011254247.1	F0F1 ATP synthase subunit beta	99.4	65.3	91.1
MGA_1169	LOCUS_10840	sequence077:1..970(+)	partial			WP_011254105.1	ATP-dependent zinc metalloprotease FtsH	97.5	44.3	69.5
MGA_1197	LOCUS_11070	sequence083:1..781(+)	partial			WP_011860792.1	DEAD/DEAH box helicase family protein	97.3	8.7	88.1
MGA_1206	LOCUS_11120	sequence085:233..1222(-)	partial			WP_005806119.1	ORF6N domain-containing protein	34.0	59.0	56.2
MGA_1214	LOCUS_11170	sequence087:2629..>3171(-)	partial			WP_003547898.1	ABC transporter ATP-binding protein	98.9	51.9	78.1
MGA_1218	LOCUS_11200	sequence088:2476..>3071(-)	partial			WP_003548309.1	nucleotidyltransferase	98.5	50.1	56.2
MGA_1224	LOCUS_11240	sequence090:2290..>2947(-)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	100.0	36.7	92.2
MGA_1226	LOCUS_11250	sequence092:1..525(+)	partial			WP_015613330.1	prolipoprotein diacylglyceryl transferase	100.0	62.4	70.1
MGA_1240	LOCUS_11340	sequence096:1..1332(+)	partial			WP_002304269.1	sigma 54-interacting transcriptional regulator	91.9	45.8	41.4
MGA_1253	LOCUS_11410	sequence099:975..1445(-)	frameshift		1609	WP_011203031.1	DUF6531 domain-containing protein	57.1	8.0	43.7
MGA_1268	LOCUS_11500	sequence106:902..1081(+)	partial			WP_011861845.1	helix-turn-helix transcriptional regulator	81.4	72.7	72.9
MGA_1269	LOCUS_11510	sequence106:1276..1452(-)	frameshift,internal_stop_codon	1430..1432(-)	1414	WP_108806778.1	recombinase family protein	81.0	9.0	91.5
MGA_1276	LOCUS_11540	sequence109:1385..>2101(-)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	92.4	37.0	89.5
MGA_1278	LOCUS_11550	sequence110:622..>2101(-)	partial			WP_011962208.1	N-6 DNA methylase	99.6	48.7	41.0
MGA_1280	LOCUS_11570	sequence111:347..586(+)	frameshift		329	WP_002262962.1	EXLDI protein	100.0	64.5	50.6
MGA_1283	LOCUS_11590	sequence112:396..545(-)	partial			WP_156831878.1	IS3 family transposase	93.9	11.9	56.5
MGA_1284	LOCUS_11600	sequence112:882..1190(-)	frameshift,internal_stop_codon	881..883(-)	1234	WP_157061663.1	IS3 family transposase	100.0	25.1	51.0
MGA_1285	LOCUS_11610	sequence112:1703..1993(-)	partial			WP_000914581.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	100.0	17.7	53.1
MGA_1289	LOCUS_11640	sequence114:350..1141(+)	partial			WP_036944238.1	leucine-rich repeat domain-containing protein	70.7	13.2	36.0
MGA_1293	LOCUS_11670	sequence115:608..1957(-)	partial			WP_013230927.1	ABC transporter ATP-binding protein	98.2	67.9	28.2
MGA_1300	LOCUS_11730	sequence118:442..>1916(-)	partial			WP_011860792.1	DEAD/DEAH box helicase family protein	99.2	17.0	68.0
MGA_1302	LOCUS_11740	sequence119:204..809(+)	partial			WP_010966054.1	peptidylprolyl isomerase	67.7	77.6	55.9
MGA_1303	LOCUS_11750	sequence119:914..>1860(-)	partial			WP_141741171.1	IS3 family transposase	88.2	58.6	61.0
MGA_1307	LOCUS_11780	sequence122:409..1479(-)	partial			WP_130543805.1	serine hydrolase	75.0	71.2	32.6
MGA_1309	LOCUS_11790	sequence123:648..>1579(-)	partial			WP_141741171.1	IS3 family transposase	92.9	60.7	51.6
