{ "type": "genome", "identifier": "GCA_022756575.1", "organism": "Lactobacillus mulieris", "title": "Lactobacillus mulieris", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "Massachusetts General Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022756575.1", "bioproject": "PRJNA799762", "biosample": "SAMN25208412", "wgs_master": "JALBSH000000000.1", "refseq_category": "na", "taxid": "2508708", "species_taxid": "2508708", "organism_name": "Lactobacillus mulieris", "infraspecific_name": "", "isolate": "MHKL_MAG_00293", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/29", "asm_name": "ASM2275657v1", "submitter": "Massachusetts General Hospital", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/756/575/GCA_022756575.1_ASM2275657v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-29", "dateModified": "2022-03-29", "datePublished": "2022-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus mulieris" ], "sample_taxid": [ "2508708" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.249 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 34.72, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "884978", "Number of Sequences": "61", "Longest Sequences (bp)": "308673", "N50 (bp)": "44264", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.7", "Number of CDSs": "834", "Average Protein Length": "299.9", "Coding Ratio (%)": "84.8", "Number of rRNAs": "0", "Number of tRNAs": "9", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus mulieris", "strain": "strain=c10Ua161M", "accession": "GCA_007095465.1", "taxid": 2508708, "species_taxid": 2508708, "relation_to_type": "type", "validated": true, "ani": 96.6408, "matched_fragments": 149, "total_fragments": 260, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus crispatus", "strain": "strain=ATCC 33820", "accession": "GCA_018987235.1", "taxid": 47770, "species_taxid": 47770, "relation_to_type": "suspected-type", "validated": true, "ani": 91.666, "matched_fragments": 151, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus crispatus", "strain": "strain=ATCC 33820", "accession": "GCA_002088015.1", "taxid": 47770, "species_taxid": 47770, "relation_to_type": "type", "validated": true, "ani": 91.572, "matched_fragments": 144, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus crispatus", "strain": "strain=NCK2488", "accession": "GCA_008694755.1", "taxid": 47770, "species_taxid": 47770, "relation_to_type": "type", "validated": true, "ani": 91.3975, "matched_fragments": 140, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus crispatus", "strain": "strain=DSM 20584", "accession": "GCA_001434005.1", "taxid": 47770, "species_taxid": 47770, "relation_to_type": "type", "validated": true, "ani": 91.3649, "matched_fragments": 147, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus jensenii", "strain": "strain=ATCC 25258", "accession": "GCA_018094625.1", "taxid": 109790, "species_taxid": 109790, "relation_to_type": "type", "validated": true, "ani": 86.2272, "matched_fragments": 139, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus jensenii", "strain": "strain=DSM 20557", "accession": "GCA_001436455.1", "taxid": 109790, "species_taxid": 109790, "relation_to_type": "type", "validated": true, "ani": 86.1728, "matched_fragments": 141, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus psittaci", "strain": "strain=DSM 15354", "accession": "GCA_001435695.1", "taxid": 116089, "species_taxid": 116089, "relation_to_type": "type", "validated": true, "ani": 82.0244, "matched_fragments": 114, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus psittaci", "strain": "strain=DSM 15354", "accession": "GCA_000425905.1", "taxid": 116089, "species_taxid": 116089, "relation_to_type": "type", "validated": true, "ani": 82.0035, "matched_fragments": 116, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus ultunensis", "strain": "strain=DSM 16047", "accession": "GCA_001436305.1", "taxid": 227945, "species_taxid": 227945, "relation_to_type": "type", "validated": true, "ani": 80.2255, "matched_fragments": 119, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus kefiranofaciens subsp. kefirgranum", "strain": "strain=DSM 10550", "accession": "GCA_001434195.1", "taxid": 190906, "species_taxid": 267818, "relation_to_type": "type", "validated": true, "ani": 79.6842, "matched_fragments": 107, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus kefiranofaciens", "strain": "strain=ATCC 43761", "accession": "GCA_900103655.1", "taxid": 267818, "species_taxid": 267818, "relation_to_type": "type", "validated": true, "ani": 79.6396, "matched_fragments": 108, "total_fragments": 260, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 34.72, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007095465.1", "gtdb_species": "s__Lactobacillus mulieris", "ani": 96.6408, "matched_fragments": 149, "total_fragments": 260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 18, "status": "conclusive" }, { "accession": "GCF_018987235.1", "gtdb_species": "s__Lactobacillus crispatus", "ani": 91.6657, "matched_fragments": 151, "total_fragments": 260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", 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