{
    "type": "genome",
    "identifier": "GCA_022759215.1",
    "organism": "Thermofilum sp.",
    "title": "Thermofilum sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Montana State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022759215.1",
        "bioproject": "PRJNA669531",
        "biosample": "SAMN16495487",
        "wgs_master": "JAEMPR000000000.1",
        "refseq_category": "na",
        "taxid": "1961369",
        "species_taxid": "1961369",
        "organism_name": "Thermofilum sp.",
        "infraspecific_name": "",
        "isolate": "2016_B01_C_6",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/29",
        "asm_name": "ASM2275921v1",
        "submitter": "Montana State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/759/215/GCA_022759215.1_ASM2275921v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-29",
    "dateModified": "2022-03-29",
    "datePublished": "2022-03-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermofilum sp."
        ],
        "sample_taxid": [
            "1961369"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Yellowstone Lake, Wyoming"
        ],
        "sample_host_location_id": [],
        "data_size": "0.622 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2161786",
        "Number of Sequences": "225",
        "Longest Sequences (bp)": "72091",
        "N50 (bp)": "16544",
        "Gap Ratio (%)": "0.298457",
        "GCcontent (%)": "45.1",
        "Number of CDSs": "2350",
        "Average Protein Length": "252.9",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermofilum adornatum",
                "strain": "strain=1910b",
                "accession": "GCA_000446015.1",
                "taxid": 1365176,
                "species_taxid": 1365176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.2896,
                "matched_fragments": 395,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000446015.1",
                "gtdb_species": "s__Thermofilum_B adornatum",
                "ani": 96.2896,
                "matched_fragments": 395,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermofilales;f__Thermofilaceae;g__Thermofilum_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.09",
                "min_intra_species_ani": "96.35",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 88.0,
        "optimum_tmp": 87.666,
        "optimum_ph": 5.5,
        "genome_size": 1725213.349,
        "gc_content": 50.573,
        "coding_genes": 1769.611,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 42.666,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.333,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.666,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Thermoprotei",
        "o__Thermofilales",
        "f__Thermofilaceae",
        "g__Thermofilum",
        "s__Thermofilum adornatum"
    ],
    "_genome_taxon": [
        "Thermofilum",
        "sp.",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Thermoprotei",
        "o__Thermofilales",
        "f__Thermofilaceae",
        "g__Thermofilum",
        "s__Thermofilum adornatum",
        "Archaea",
        "Thermoproteota",
        "Thermoprotei",
        "Thermofilales",
        "Thermofilaceae",
        "Thermofilum",
        "Thermofilum",
        "adornatum"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}