{ "type": "genome", "identifier": "GCA_022759305.1", "organism": "Thermoproteus sp.", "title": "Thermoproteus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Montana State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022759305.1", "bioproject": "PRJNA669531", "biosample": "SAMN16495483", "wgs_master": "JAEMPN000000000.1", "refseq_category": "na", "taxid": "2268139", "species_taxid": "2268139", "organism_name": "Thermoproteus sp.", "infraspecific_name": "", "isolate": "2016_B01_C_7", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/29", "asm_name": "ASM2275930v1", "submitter": "Montana State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/759/305/GCA_022759305.1_ASM2275930v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-29", "dateModified": "2022-03-29", "datePublished": "2022-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermoproteus sp." ], "sample_taxid": [ "2268139" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Yellowstone Lake, Wyoming" ], "sample_host_location_id": [], "data_size": "0.406 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.07, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1441578", "Number of Sequences": "87", "Longest Sequences (bp)": "71542", "N50 (bp)": "30026", "Gap Ratio (%)": "0.243483", "GCcontent (%)": "61.2", "Number of CDSs": "1605", "Average Protein Length": "258.4", "Coding Ratio (%)": "86.3", "Number of rRNAs": "0", "Number of tRNAs": "3", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 85.07, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002077075.2", "gtdb_species": "s__Thermoproteus sp002077075", "ani": 96.7971, "matched_fragments": 328, "total_fragments": 442, "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermoproteaceae;g__Thermoproteus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.46", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.63", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_000193375.1", "gtdb_species": "s__Thermoproteus uzoniensis", "ani": 82.4109, "matched_fragments": 369, "total_fragments": 442, "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermoproteaceae;g__Thermoproteus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009903905.1", "gtdb_species": "s__Pyrobaculum sp009903905", "ani": 78.2848, "matched_fragments": 56, "total_fragments": 442, "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermoproteaceae;g__Pyrobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002497345.1", "gtdb_species": "s__Thermoproteus sp002497345", "ani": 78.2447, "matched_fragments": 174, "total_fragments": 442, "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermoproteaceae;g__Thermoproteus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001189275.1", "gtdb_species": "s__Pyrobaculum sp001189275", "ani": 78.0476, "matched_fragments": 63, "total_fragments": 442, "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermoproteaceae;g__Pyrobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000960885.1", "gtdb_species": "s__Thermoproteus sp000960885", "ani": 77.152, "matched_fragments": 106, "total_fragments": 442, "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermoproteaceae;g__Thermoproteus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 87.0, "optimum_tmp": 86.0, "optimum_ph": null, "genome_size": 1841541.5, "gc_content": 55.1, "coding_genes": 1989.0, "rRNA16S_genes": 1.0, "tRNA_genes": 44.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Thermoproteota", "c__Thermoprotei", "o__Thermoproteales", "f__Thermoproteaceae", "g__Thermoproteus", "s__Thermoproteus sp002077075" ], "_genome_taxon": [ "Thermoproteus", "sp.", "d__Archaea", "p__Thermoproteota", "c__Thermoprotei", "o__Thermoproteales", "f__Thermoproteaceae", "g__Thermoproteus", "s__Thermoproteus sp002077075", "Archaea", "Thermoproteota", "Thermoprotei", "Thermoproteales", "Thermoproteaceae", "Thermoproteus", "Thermoproteus", "sp002077075" ], "_meo": [ { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }