{
    "type": "genome",
    "identifier": "GCA_022767045.1",
    "organism": "Succinivibrio sp.",
    "title": "Succinivibrio sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "AAFC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022767045.1",
        "bioproject": "PRJNA629856",
        "biosample": "SAMN26525460",
        "wgs_master": "JALEQF000000000.1",
        "refseq_category": "na",
        "taxid": "2053619",
        "species_taxid": "2053619",
        "organism_name": "Succinivibrio sp.",
        "infraspecific_name": "",
        "isolate": "SUG236",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/31",
        "asm_name": "ASM2276704v1",
        "submitter": "AAFC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/767/045/GCA_022767045.1_ASM2276704v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-31",
    "dateModified": "2022-03-31",
    "datePublished": "2022-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Succinivibrio sp."
        ],
        "sample_taxid": [
            "2053619"
        ],
        "sample_host_organism": [
            "Sus scrofa domesticus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada:Lacombe"
        ],
        "sample_host_location_id": [],
        "data_size": "0.624 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2222188",
        "Number of Sequences": "159",
        "Longest Sequences (bp)": "91023",
        "N50 (bp)": "18685",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.5",
        "Number of CDSs": "1857",
        "Average Protein Length": "339.3",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Succinivibrio dextrinosolvens",
                "strain": "strain=DSM 3072",
                "accession": "GCA_900167015.1",
                "taxid": 83771,
                "species_taxid": 83771,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4373,
                "matched_fragments": 139,
                "total_fragments": 662,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerobiospirillum succiniciproducens",
                "strain": "strain=DSM 6400",
                "accession": "GCA_000482845.1",
                "taxid": 13335,
                "species_taxid": 13335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7164,
                "matched_fragments": 54,
                "total_fragments": 662,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.17,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902785325.1",
                "gtdb_species": "s__Succinivibrio sp003456415",
                "ani": 96.7239,
                "matched_fragments": 549,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900316375.1",
                "gtdb_species": "s__Succinivibrio sp900316375",
                "ani": 79.8881,
                "matched_fragments": 258,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012519775.1",
                "gtdb_species": "s__Succinivibrio sp012519775",
                "ani": 79.5478,
                "matched_fragments": 225,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900315395.1",
                "gtdb_species": "s__Succinivibrio sp900315395",
                "ani": 79.476,
                "matched_fragments": 262,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000431835.1",
                "gtdb_species": "s__Succinivibrio sp000431835",
                "ani": 79.3523,
                "matched_fragments": 263,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.12",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_002449335.1",
                "gtdb_species": "s__Succinivibrio sp002449335",
                "ani": 79.3235,
                "matched_fragments": 267,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900316175.1",
                "gtdb_species": "s__Succinivibrio sp900316175",
                "ani": 78.6178,
                "matched_fragments": 139,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900167015.1",
                "gtdb_species": "s__Succinivibrio dextrinosolvens",
                "ani": 78.4373,
                "matched_fragments": 139,
                "total_fragments": 662,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2857734.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Succinivibrionaceae",
        "g__Succinivibrio",
        "s__Succinivibrio sp003456415"
    ],
    "_genome_taxon": [
        "Succinivibrio",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Succinivibrionaceae",
        "g__Succinivibrio",
        "s__Succinivibrio sp003456415",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Succinivibrionaceae",
        "Succinivibrio",
        "Succinivibrio",
        "sp003456415"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}