{ "type": "genome", "identifier": "GCA_022769375.1", "organism": "Brachyspira sp.", "title": "Brachyspira sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022769375.1", "bioproject": "PRJNA629856", "biosample": "SAMN26525299", "wgs_master": "JALEKA000000000.1", "refseq_category": "na", "taxid": "1977261", "species_taxid": "1977261", "organism_name": "Brachyspira sp.", "infraspecific_name": "", "isolate": "SUG75", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/31", "asm_name": "ASM2276937v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/769/375/GCA_022769375.1_ASM2276937v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-31", "dateModified": "2022-03-31", "datePublished": "2022-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachyspira sp." ], "sample_taxid": [ "1977261" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.496 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.69, "strain_heterogeneity": 58.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1760128", "Number of Sequences": "113", "Longest Sequences (bp)": "79733", "N50 (bp)": "23132", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.4", "Number of CDSs": "1591", "Average Protein Length": "308.5", "Coding Ratio (%)": "83.7", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 4.69, "strain_heterogeneity": 58.33 }, "gtdb_result": [ { "accession": "GCA_900321895.1", "gtdb_species": "s__Scatousia sp900321895", "ani": 98.3781, "matched_fragments": 372, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_900767135.1", "gtdb_species": "s__Stercorousia sp900767135", "ani": 79.7843, "matched_fragments": 156, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900769645.1", "gtdb_species": "s__Stercorousia sp900769645", "ani": 78.6681, "matched_fragments": 155, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017694215.1", "gtdb_species": "s__Scatousia excrementipullorum", "ani": 78.5049, "matched_fragments": 210, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018711035.1", "gtdb_species": "s__Scatousia excrementigallinarum", "ani": 78.2092, "matched_fragments": 167, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900769355.1", "gtdb_species": "s__Stercorousia sp900769355", "ani": 78.0404, "matched_fragments": 154, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905216055.1", "gtdb_species": "s__Stercorousia sp905216055", "ani": 78.0299, "matched_fragments": 150, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900554385.1", "gtdb_species": "s__Scatousia sp900554385", "ani": 78.0188, "matched_fragments": 170, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910588555.1", "gtdb_species": "s__Stercorousia sp910588555", "ani": 77.9263, "matched_fragments": 148, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002405805.1", "gtdb_species": "s__Zag111 sp002405805", "ani": 77.8156, "matched_fragments": 112, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Zag111", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017559905.1", "gtdb_species": "s__Scatenecus sp017559905", "ani": 77.804, "matched_fragments": 116, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Scatenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001765415.1", "gtdb_species": "s__Stercorousia sp001765415", "ani": 77.7989, "matched_fragments": 158, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900770525.1", "gtdb_species": "s__UBA1221 sp900770525", "ani": 77.639, "matched_fragments": 150, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__UBA1221", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900548405.1", "gtdb_species": "s__Stercorousia sp001917115", "ani": 77.5419, "matched_fragments": 139, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_900752845.1", "gtdb_species": "s__Stercorousia sp900752845", "ani": 77.5069, "matched_fragments": 114, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.76", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000433095.1", "gtdb_species": "s__Stercorousia sp000433095", "ani": 77.1628, "matched_fragments": 139, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017633675.1", "gtdb_species": "s__Stercorousia sp017633675", "ani": 77.065, "matched_fragments": 120, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Vampirovibrionia;o__Gastranaerophilales;f__Gastranaerophilaceae;g__Stercorousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.456, "cell_length": 0.738, "doubling_h": 0.477, "growth_tmp": 37.0, "optimum_tmp": 37.4, "optimum_ph": 7.1, "genome_size": 3148275.979, "gc_content": 27.312, "coding_genes": 2613.666, "rRNA16S_genes": 1.0, "tRNA_genes": 33.25, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.25, "anaerobic_respiration": 0.75, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Cyanobacteriota", "c__Vampirovibrionia", "o__Gastranaerophilales", "f__Gastranaerophilaceae", "g__Scatousia", "s__Scatousia sp900321895" ], "_genome_taxon": [ "Brachyspira", "sp.", "d__Bacteria", "p__Cyanobacteriota", "c__Vampirovibrionia", "o__Gastranaerophilales", "f__Gastranaerophilaceae", "g__Scatousia", "s__Scatousia sp900321895", "Bacteria", "Cyanobacteriota", "Vampirovibrionia", "Gastranaerophilales", "Gastranaerophilaceae", "Scatousia", "Scatousia", "sp900321895" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }