{ "type": "genome", "identifier": "GCA_022769855.1", "organism": "Pseudoflavonifractor capillosus", "title": "Pseudoflavonifractor capillosus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022769855.1", "bioproject": "PRJNA629856", "biosample": "SAMN26525280", "wgs_master": "JALEJH000000000.1", "refseq_category": "na", "taxid": "106588", "species_taxid": "106588", "organism_name": "Pseudoflavonifractor capillosus", "infraspecific_name": "", "isolate": "SUG56", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/31", "asm_name": "ASM2276985v1", "submitter": "AAFC", "gbrs_paired_asm": "GCF_022769855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/769/855/GCA_022769855.1_ASM2276985v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-31", "dateModified": "2022-03-31", "datePublished": "2022-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoflavonifractor capillosus" ], "sample_taxid": [ "106588" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.15, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3079331", "Number of Sequences": "68", "Longest Sequences (bp)": "254778", "N50 (bp)": "70646", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.1", "Number of CDSs": "2763", "Average Protein Length": "322.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavonifractor plautii", "strain": "strain=ATCC 29863", "accession": "GCA_000239295.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2711, "matched_fragments": 415, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=JCM 32125", "accession": "GCA_010508875.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1378, "matched_fragments": 448, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoflavonifractor gallinarum", "strain": "strain=DSM 107456", "accession": "GCA_014982855.1", "taxid": 2779352, "species_taxid": 2779352, "relation_to_type": "type", "validated": true, "ani": 81.0399, "matched_fragments": 375, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium phoceensis", "strain": "strain=GD3", "accession": "GCA_001244495.1", "taxid": 1650661, "species_taxid": 1650661, "relation_to_type": "type", "validated": true, "ani": 79.0721, "matched_fragments": 282, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_024622565.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 79.0314, "matched_fragments": 286, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=SRB-521-5-I", "accession": "GCA_004154955.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 79.0179, "matched_fragments": 297, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_003096335.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 78.9753, "matched_fragments": 293, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 78.351, "matched_fragments": 203, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter acutus", "strain": "strain=MSJ-2", "accession": "GCA_018919205.1", "taxid": 2841504, "species_taxid": 2841504, "relation_to_type": "type", "validated": true, "ani": 77.7088, "matched_fragments": 170, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium hattorii", "strain": "strain=APC922/41-1", "accession": "GCA_003287455.1", "taxid": 2935520, "species_taxid": 2935520, "relation_to_type": "type", "validated": true, "ani": 76.8746, "matched_fragments": 91, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Papillibacter cinnamivorans", "strain": "strain=DSM 12816", "accession": "GCA_900176335.1", "taxid": 100176, "species_taxid": 100176, "relation_to_type": "type", "validated": true, "ani": 76.2919, "matched_fragments": 75, "total_fragments": 996, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.15, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000169255.2", "gtdb_species": "s__Pseudoflavonifractor capillosus", "ani": 96.0766, "matched_fragments": 844, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_904419835.1", "gtdb_species": "s__Pseudoflavonifractor sp904419835", "ani": 91.2529, "matched_fragments": 656, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002161215.1", "gtdb_species": "s__Flavonifractor avistercoris", "ani": 82.0603, "matched_fragments": 454, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002159265.1", "gtdb_species": "s__Flavonifractor sp002159265", "ani": 81.8547, "matched_fragments": 425, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017811815.1", "gtdb_species": "s__Flavonifractor sp017811815", "ani": 81.7796, "matched_fragments": 434, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002161085.1", "gtdb_species": "s__Flavonifractor avicola", "ani": 81.6664, "matched_fragments": 400, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.94", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_019119165.1", "gtdb_species": "s__Flavonifractor intestinigallinarum", "ani": 81.5267, "matched_fragments": 362, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900549565.1", "gtdb_species": "s__UMGS1202 sp900549565", "ani": 81.4284, "matched_fragments": 425, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__UMGS1202", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014287675.1", "gtdb_species": "s__Pseudoflavonifractor sp014287675", "ani": 81.3987, "matched_fragments": 553, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Pseudoflavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_000239295.1", "gtdb_species": "s__Flavonifractor plautii", "ani": 81.2888, "matched_fragments": 415, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Flavonifractor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.59", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCA_018715695.1", "gtdb_species": "s__Galloscillospira_A stercoripullorum", "ani": 81.1584, "matched_fragments": 313, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Galloscillospira_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900626145.1", "gtdb_species": "s__Intestinimonas timonensis", "ani": 81.1111, "matched_fragments": 390, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Intestinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014287895.1", "gtdb_species": "s__NSJ-51 sp900549795", "ani": 79.7102, "matched_fragments": 348, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__NSJ-51", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902363045.1", "gtdb_species": "s__Lawsonibacter sp902363045", "ani": 79.4613, "matched_fragments": 260, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_015067885.1", "gtdb_species": "s__Lawsonibacter sp015067885", "ani": 79.0134, "matched_fragments": 179, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009911595.1", "gtdb_species": "s__Lawsonibacter sp009911595", "ani": 78.9353, "matched_fragments": 268, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Lawsonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585415.1", "gtdb_species": "s__NSJ-51 sp910585415", "ani": 78.7731, "matched_fragments": 246, "total_fragments": 996, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__NSJ-51", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.204, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 4241464.5, "gc_content": 59.115, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Pseudoflavonifractor", "s__Pseudoflavonifractor sp902362925" ], "_genome_taxon": [ "Pseudoflavonifractor", "capillosus", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Pseudoflavonifractor", "s__Pseudoflavonifractor sp902362925", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Pseudoflavonifractor", "Pseudoflavonifractor", "sp902362925" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }