{ "type": "genome", "identifier": "GCA_022771205.1", "organism": "Mycoplasmatota bacterium", "title": "Mycoplasmatota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022771205.1", "bioproject": "PRJNA629856", "biosample": "SAMN26525772", "wgs_master": "JALFCF000000000.1", "refseq_category": "na", "taxid": "2231116", "species_taxid": "2231116", "organism_name": "Mycoplasmatota bacterium", "infraspecific_name": "", "isolate": "SUG548", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/31", "asm_name": "ASM2277120v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/771/205/GCA_022771205.1_ASM2277120v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-31", "dateModified": "2022-03-31", "datePublished": "2022-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycoplasmatota bacterium" ], "sample_taxid": [ "2231116" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.369 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1359237", "Number of Sequences": "8", "Longest Sequences (bp)": "289843", "N50 (bp)": "218113", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.4", "Number of CDSs": "1411", "Average Protein Length": "294.7", "Coding Ratio (%)": "91.8", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900554305.1", "gtdb_species": "s__Faecimonas intestinavium", "ani": 84.8377, "matched_fragments": 249, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.70", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900554315.1", "gtdb_species": "s__Faecimonas sp900554315", "ani": 81.5677, "matched_fragments": 260, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018712565.1", "gtdb_species": "s__Faecimonas gallistercoris", "ani": 80.9979, "matched_fragments": 212, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017886705.1", "gtdb_species": "s__Faecimonas sp017886705", "ani": 80.967, "matched_fragments": 244, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900548695.1", "gtdb_species": "s__Faecimonas sp900548695", "ani": 80.757, "matched_fragments": 255, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905209745.1", "gtdb_species": "s__Faecimonas sp905209745", "ani": 79.5133, "matched_fragments": 119, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015059435.1", "gtdb_species": "s__Faecimonas sp015059435", "ani": 78.9759, "matched_fragments": 122, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017416535.1", "gtdb_species": "s__CAG-877 sp017416535", "ani": 78.6281, "matched_fragments": 118, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017460175.1", "gtdb_species": "s__UBA3789 sp017460175", "ani": 78.1147, "matched_fragments": 107, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA3789", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902780395.1", "gtdb_species": "s__UBA3789 sp902780395", "ani": 77.4198, "matched_fragments": 112, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA3789", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__Faecimonas", "s__Faecimonas sp022771205" ], "_genome_taxon": [ "Mycoplasmatota", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__Faecimonas", "s__Faecimonas sp022771205", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RF39", "UBA660", "Faecimonas", "Faecimonas", "sp022771205" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }