{ "type": "genome", "identifier": "GCA_022773025.1", "organism": "Clostridium sp.", "title": "Clostridium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022773025.1", "bioproject": "PRJNA629856", "biosample": "SAMN26525694", "wgs_master": "JALEZF000000000.1", "refseq_category": "na", "taxid": "1506", "species_taxid": "1506", "organism_name": "Clostridium sp.", "infraspecific_name": "", "isolate": "SUG470", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/31", "asm_name": "ASM2277302v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/773/025/GCA_022773025.1_ASM2277302v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-31", "dateModified": "2022-03-31", "datePublished": "2022-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium sp." ], "sample_taxid": [ "1506" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.878 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.45, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3153802", "Number of Sequences": "114", "Longest Sequences (bp)": "132707", "N50 (bp)": "44993", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.4", "Number of CDSs": "3070", "Average Protein Length": "291.3", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium frigidicarnis", "strain": "strain=DSM 12271", "accession": "GCA_900111985.1", "taxid": 84698, "species_taxid": 84698, "relation_to_type": "type", "validated": true, "ani": 77.5262, "matched_fragments": 151, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=NCTC8380", "accession": "GCA_900461065.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 77.1438, "matched_fragments": 127, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=DSM 2631", "accession": "GCA_900129365.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 77.1387, "matched_fragments": 125, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium nigeriense", "strain": "strain=Marseille-P2414", "accession": "GCA_900086595.1", "taxid": 1805470, "species_taxid": 1805470, "relation_to_type": "type", "validated": true, "ani": 77.1227, "matched_fragments": 125, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium amylolyticum", "strain": "strain=DSM 21864", "accession": "GCA_900142075.1", "taxid": 1121298, "species_taxid": 1121298, "relation_to_type": "type", "validated": true, "ani": 77.0867, "matched_fragments": 91, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium simiarum", "strain": "strain=MSJ-4", "accession": "GCA_018919175.1", "taxid": 2841506, "species_taxid": 2841506, "relation_to_type": "type", "validated": true, "ani": 76.973, "matched_fragments": 117, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium hydrogeniformans", "strain": "strain=DSM 21757", "accession": "GCA_000686705.1", "taxid": 349933, "species_taxid": 349933, "relation_to_type": "type", "validated": true, "ani": 76.9443, "matched_fragments": 159, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium uliginosum", "strain": "strain=DSM 12992", "accession": "GCA_900112485.1", "taxid": 119641, "species_taxid": 119641, "relation_to_type": "type", "validated": true, "ani": 76.9156, "matched_fragments": 103, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 76.8686, "matched_fragments": 112, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium perfringens", "strain": "strain=FDAARGOS_903", "accession": "GCA_016027375.1", "taxid": 1502, "species_taxid": 1502, "relation_to_type": "type", "validated": true, "ani": 76.8255, "matched_fragments": 99, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium weizhouense", "strain": "strain=YB-6", "accession": "GCA_019431045.1", "taxid": 2859781, "species_taxid": 2859781, "relation_to_type": "type", "validated": true, "ani": 76.7866, "matched_fragments": 103, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cibarium", "strain": "strain=Sa3CVN1", "accession": "GCA_014836335.1", "taxid": 2762247, "species_taxid": 2762247, "relation_to_type": "type", "validated": true, "ani": 76.6308, "matched_fragments": 98, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium massiliodielmoense", "strain": "strain=MT26", "accession": "GCA_900176615.1", "taxid": 1776385, "species_taxid": 1776385, "relation_to_type": "type", "validated": true, "ani": 76.5897, "matched_fragments": 84, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tarantellae", "strain": "strain=DSM 3997", "accession": "GCA_009295725.1", "taxid": 39493, "species_taxid": 39493, "relation_to_type": "type", "validated": true, "ani": 76.5859, "matched_fragments": 111, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium aciditolerans", "strain": "strain=DSM 17425", "accession": "GCA_016316925.1", "taxid": 339861, "species_taxid": 339861, "relation_to_type": "type", "validated": true, "ani": 76.5753, "matched_fragments": 87, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloimpatiens massiliensis", "strain": "strain=Mt13", "accession": "GCA_900184255.1", "taxid": 1658110, "species_taxid": 1658110, "relation_to_type": "type", "validated": true, "ani": 76.4914, "matched_fragments": 103, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_002006445.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3929, "matched_fragments": 99, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_018223745.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 76.377, "matched_fragments": 104, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 7320", "accession": "GCA_002006215.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 76.3503, "matched_fragments": 80, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gelidum", "strain": "strain=C5S11", "accession": "GCA_019977655.1", "taxid": 704125, "species_taxid": 704125, "relation_to_type": "type", "validated": true, "ani": 76.1637, "matched_fragments": 109, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium acidisoli", "strain": "strain=DSM 12555", "accession": "GCA_900176305.1", "taxid": 91624, "species_taxid": 91624, "relation_to_type": "type", "validated": true, "ani": 76.1624, "matched_fragments": 65, "total_fragments": 997, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 793", "accession": "GCA_002006235.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, 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{ "accession": "GCF_004794105.1", "gtdb_species": "s__Clostridium sartagoforme_B", "ani": 76.9921, "matched_fragments": 120, "total_fragments": 997, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018918055.1", "gtdb_species": "s__Clostridium sp018918055", "ani": 76.9491, "matched_fragments": 79, "total_fragments": 997, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000686705.1", "gtdb_species": 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