{ "type": "genome", "identifier": "GCA_022774145.1", "organism": "Olsenella sp.", "title": "Olsenella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022774145.1", "bioproject": "PRJNA629856", "biosample": "SAMN26526075", "wgs_master": "JALFNW000000000.1", "refseq_category": "na", "taxid": "2042683", "species_taxid": "2042683", "organism_name": "Olsenella sp.", "infraspecific_name": "", "isolate": "SUG851", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2277414v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/774/145/GCA_022774145.1_ASM2277414v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Olsenella sp." ], "sample_taxid": [ "2042683" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.28, "contamination": 1.89, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1519844", "Number of Sequences": "218", "Longest Sequences (bp)": "27367", "N50 (bp)": "9074", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "1168", "Average Protein Length": "318.0", "Coding Ratio (%)": "73.3", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 81.5849, "matched_fragments": 275, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 81.4159, "matched_fragments": 264, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter immobilis", "strain": "strain=LZLJ-2", "accession": "GCA_015277515.1", "taxid": 2779519, "species_taxid": 2779519, "relation_to_type": "type", "validated": true, "ani": 80.8546, "matched_fragments": 249, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 80.7253, "matched_fragments": 180, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 80.6023, "matched_fragments": 199, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 80.4081, "matched_fragments": 195, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella urininfantis", "strain": "strain=Marseille-P3197", "accession": "GCA_900155635.1", "taxid": 1871033, "species_taxid": 1871033, "relation_to_type": "type", "validated": true, "ani": 80.0584, "matched_fragments": 167, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella phocaeensis", "strain": "strain=Marseille-P2936", "accession": "GCA_900120385.1", "taxid": 1852385, "species_taxid": 1852385, "relation_to_type": "type", "validated": true, "ani": 79.9886, "matched_fragments": 181, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8059, "matched_fragments": 172, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella massiliensis", "strain": "strain=SIT9", "accession": "GCA_001457795.1", "taxid": 1622075, "species_taxid": 1622075, "relation_to_type": "type", "validated": true, "ani": 79.343, "matched_fragments": 158, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 79.0891, "matched_fragments": 111, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 78.9762, "matched_fragments": 109, "total_fragments": 398, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.28, "contamination": 1.89, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003416765.1", "gtdb_species": "s__Paratractidigestivibacter faecalis", "ani": 95.6867, "matched_fragments": 385, "total_fragments": 398, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Paratractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.79", "min_intra_species_ani": "95.48", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_905215465.1", "gtdb_species": "s__Paratractidigestivibacter sp905215465", "ani": 92.4231, "matched_fragments": 350, "total_fragments": 398, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Paratractidigestivibacter", 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"Coriobacteriales", "Atopobiaceae", "Paratractidigestivibacter", "Paratractidigestivibacter", "faecalis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }