{ "type": "genome", "identifier": "GCA_022776515.1", "organism": "Lactobacillus johnsonii", "title": "Lactobacillus johnsonii", "description": "contaminated; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022776515.1", "bioproject": "PRJNA629856", "biosample": "SAMN26525913", "wgs_master": "JALFHQ000000000.1", "refseq_category": "na", "taxid": "33959", "species_taxid": "33959", "organism_name": "Lactobacillus johnsonii", "infraspecific_name": "", "isolate": "SUG689", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2277651v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/776/515/GCA_022776515.1_ASM2277651v1", "excluded_from_refseq": "contaminated; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus johnsonii" ], "sample_taxid": [ "33959" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.549 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1944345", "Number of Sequences": "195", "Longest Sequences (bp)": "63816", "N50 (bp)": "15328", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "1825", "Average Protein Length": "286.0", "Coding Ratio (%)": "80.5", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus johnsonii", "strain": "strain=ATCC 33200", "accession": "GCA_001433975.1", "taxid": 33959, "species_taxid": 33959, "relation_to_type": "type", "validated": true, "ani": 96.4948, "matched_fragments": 429, "total_fragments": 546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus johnsonii", "strain": "strain=ATCC 33200", "accession": "GCA_000159355.1", "taxid": 33959, "species_taxid": 33959, "relation_to_type": "type", "validated": true, "ani": 96.4914, "matched_fragments": 426, "total_fragments": 546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus taiwanensis", "strain": "strain=DSM 21401", "accession": "GCA_001436695.1", 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