{
    "type": "genome",
    "identifier": "GCA_022778825.1",
    "organism": "Shigella dysenteriae",
    "title": "Shigella dysenteriae",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "AAFC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022778825.1",
        "bioproject": "PRJNA629856",
        "biosample": "SAMN26526198",
        "wgs_master": "JALFSP000000000.1",
        "refseq_category": "na",
        "taxid": "622",
        "species_taxid": "622",
        "organism_name": "Shigella dysenteriae",
        "infraspecific_name": "",
        "isolate": "SUG974",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2277882v1",
        "submitter": "AAFC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/778/825/GCA_022778825.1_ASM2277882v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shigella dysenteriae"
        ],
        "sample_taxid": [
            "622"
        ],
        "sample_host_organism": [
            "Sus scrofa domesticus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada:Lacombe"
        ],
        "sample_host_location_id": [],
        "data_size": "1.157 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 92.01,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4037817",
        "Number of Sequences": "512",
        "Longest Sequences (bp)": "44778",
        "N50 (bp)": "10277",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.0",
        "Number of CDSs": "3393",
        "Average Protein Length": "301.2",
        "Coding Ratio (%)": "75.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shigella dysenteriae",
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                "species_taxid": 622,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella dysenteriae",
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                "accession": "GCA_002949675.1",
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                "species_taxid": 622,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
                "strain": "strain=ATCC 29930",
                "accession": "GCA_002950395.1",
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                "species_taxid": 624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.4459,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
                "strain": "strain=NCTC12984",
                "accession": "GCA_900457155.1",
                "taxid": 624,
                "species_taxid": 624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.3494,
                "matched_fragments": 973,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella flexneri 2a",
                "strain": "strain=ATCC 29903",
                "accession": "GCA_002950215.1",
                "taxid": 42897,
                "species_taxid": 623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.2911,
                "matched_fragments": 952,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella boydii",
                "strain": "strain=FDAARGOS_1139",
                "accession": "GCA_016726285.1",
                "taxid": 621,
                "species_taxid": 621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1641,
                "matched_fragments": 941,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella boydii",
                "strain": "strain=NCTC12985",
                "accession": "GCA_900457095.1",
                "taxid": 621,
                "species_taxid": 621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1512,
                "matched_fragments": 939,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_003697165.2",
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                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 96.7798,
                "matched_fragments": 991,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=DSM 30083",
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                "species_taxid": 562,
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                "ani": 96.744,
                "matched_fragments": 991,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_000734955.1",
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                "species_taxid": 562,
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                "validated": true,
                "ani": 96.7295,
                "matched_fragments": 977,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_024519395.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
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                "matched_fragments": 979,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=NBRC 107761",
                "accession": "GCA_000759775.1",
                "taxid": 208962,
                "species_taxid": 208962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2128,
                "matched_fragments": 856,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=DSM 17582",
                "accession": "GCA_022833075.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 90.1216,
                "matched_fragments": 910,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
                "taxid": 2891570,
                "species_taxid": 2891570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2219,
                "matched_fragments": 667,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_003697165.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "Escherichia",
        "Escherichia",
        "coli"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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        }
    ],
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}