{ "type": "genome", "identifier": "GCA_022778925.1", "organism": "Lentisphaeraceae bacterium", "title": "Lentisphaeraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022778925.1", "bioproject": "PRJNA629856", "biosample": "SAMN26526187", "wgs_master": "JALFSE000000000.1", "refseq_category": "na", "taxid": "2461380", "species_taxid": "2461380", "organism_name": "Lentisphaeraceae bacterium", "infraspecific_name": "", "isolate": "SUG963", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2277892v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/778/925/GCA_022778925.1_ASM2277892v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentisphaeraceae bacterium" ], "sample_taxid": [ "2461380" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.556 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1983952", "Number of Sequences": "141", "Longest Sequences (bp)": "56048", "N50 (bp)": "20370", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "1486", "Average Protein Length": "368.7", "Coding Ratio (%)": "82.8", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_004555175.1", "gtdb_species": "s__Spyradenecus sp004555175", "ani": 96.5749, "matched_fragments": 536, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_900771325.1", "gtdb_species": "s__Spyradenecus sp900771325", "ani": 89.602, "matched_fragments": 471, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018713405.1", "gtdb_species": "s__Spyradenecus faecavium", "ani": 79.7803, "matched_fragments": 214, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017558005.1", "gtdb_species": "s__Spyradenecus sp017558005", "ani": 78.2009, "matched_fragments": 83, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.80", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017548245.1", "gtdb_species": "s__Spyradenecus sp017548245", "ani": 77.8408, "matched_fragments": 67, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": -0.097, "doubling_h": null, "growth_tmp": 23.0, "optimum_tmp": 20.0, "optimum_ph": 8.0, "genome_size": 6023180.0, "gc_content": 41.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Kiritimatiellia", "o__RFP12", "f__UBA1067", "g__Spyradenecus", "s__Spyradenecus sp004555175" ], "_genome_taxon": [ "Lentisphaeraceae", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Kiritimatiellia", "o__RFP12", "f__UBA1067", "g__Spyradenecus", "s__Spyradenecus sp004555175", "Bacteria", "Verrucomicrobiota", "Kiritimatiellia", "RFP12", "UBA1067", "Spyradenecus", "Spyradenecus", "sp004555175" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }