{ "type": "genome", "identifier": "GCA_022783705.1", "organism": "Megasphaera sp.", "title": "Megasphaera sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022783705.1", "bioproject": "PRJNA629856", "biosample": "SAMN26927449", "wgs_master": "JALFYI000000000.1", "refseq_category": "na", "taxid": "2023260", "species_taxid": "2023260", "organism_name": "Megasphaera sp.", "infraspecific_name": "", "isolate": "SUG1123", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2278370v1", "submitter": "AAFC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/783/705/GCA_022783705.1_ASM2278370v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Megasphaera sp." ], "sample_taxid": [ "2023260" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2265276", "Number of Sequences": "106", "Longest Sequences (bp)": "73437", "N50 (bp)": "30584", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.3", "Number of CDSs": "2033", "Average Protein Length": "314.0", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Megasphaera elsdenii", "strain": "strain=ATCC 25940", "accession": "GCA_003010495.1", "taxid": 907, "species_taxid": 907, "relation_to_type": "type", "validated": true, "ani": 90.5232, "matched_fragments": 586, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megasphaera elsdenii", "strain": "strain=DSM 20460", "accession": "GCA_000283495.2", "taxid": 907, "species_taxid": 907, "relation_to_type": "type", "validated": true, "ani": 90.5028, "matched_fragments": 583, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megasphaera massiliensis", "strain": "strain=NP3", "accession": "GCA_000455225.1", "taxid": 1232428, "species_taxid": 1232428, "relation_to_type": "suspected-type", 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