{ "type": "genome", "identifier": "GCA_022784485.1", "organism": "Methanobrevibacter smithii", "title": "Methanobrevibacter smithii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022784485.1", "bioproject": "PRJNA629856", "biosample": "SAMN26927345", "wgs_master": "JALFUI000000000.1", "refseq_category": "na", "taxid": "2173", "species_taxid": "2173", "organism_name": "Methanobrevibacter smithii", "infraspecific_name": "", "isolate": "SUG1019", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2278448v1", "submitter": "AAFC", "gbrs_paired_asm": "GCF_022784485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/784/485/GCA_022784485.1_ASM2278448v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobrevibacter smithii" ], "sample_taxid": [ "2173" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.452 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1633763", "Number of Sequences": "43", "Longest Sequences (bp)": "126023", "N50 (bp)": "66108", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.4", "Number of CDSs": "1581", "Average Protein Length": "295.7", "Coding Ratio (%)": "85.8", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter smithii", "strain": "strain=ATCC 35061; PS; DSMZ 861", "accession": "GCA_000016525.1", "taxid": 2173, "species_taxid": 2173, "relation_to_type": "type", "validated": true, "ani": 98.8965, "matched_fragments": 516, "total_fragments": 527, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methanobrevibacter woesei", "strain": "strain=DSM 11979", "accession": "GCA_003111605.1", "taxid": 190976, "species_taxid": 190976, "relation_to_type": "type", "validated": true, "ani": 80.2491, "matched_fragments": 263, "total_fragments": 527, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter oralis", "strain": "strain=DSM 7256", "accession": "GCA_001639275.1", "taxid": 66851, "species_taxid": 66851, "relation_to_type": "type", "validated": true, "ani": 79.6073, "matched_fragments": 267, "total_fragments": 527, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter gottschalkii", "strain": "strain=DSM 11977", "accession": "GCA_003814835.1", "taxid": 190974, "species_taxid": 190974, "relation_to_type": "type", "validated": true, "ani": 79.3122, "matched_fragments": 268, "total_fragments": 527, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter arboriphilus", "strain": "strain=DH1", "accession": "GCA_002072215.1", "taxid": 39441, "species_taxid": 39441, "relation_to_type": "type", "validated": true, "ani": 76.6459, "matched_fragments": 100, "total_fragments": 527, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter cuticularis", "strain": "strain=DSM 11139", "accession": "GCA_001639285.1", "taxid": 47311, 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"d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_003111605.1", "gtdb_species": "s__Methanobrevibacter_A woesei", "ani": 80.2498, "matched_fragments": 263, "total_fragments": 527, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.82", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001639275.1", "gtdb_species": "s__Methanobrevibacter_A oralis", "ani": 79.5888, "matched_fragments": 268, "total_fragments": 527, 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0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter_A", "s__Methanobrevibacter_A smithii" ], "_genome_taxon": [ "Methanobrevibacter", "smithii", "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter_A", "s__Methanobrevibacter_A smithii", "Archaea", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "A", "Methanobrevibacter", "A", "smithii" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }