{ "type": "genome", "identifier": "GCA_022785925.1", "organism": "Desulfovibrio piger", "title": "Desulfovibrio piger", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AAFC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022785925.1", "bioproject": "PRJNA629856", "biosample": "SAMN26526135", "wgs_master": "JALFQE000000000.1", "refseq_category": "na", "taxid": "901", "species_taxid": "901", "organism_name": "Desulfovibrio piger", "infraspecific_name": "", "isolate": "SUG911", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2278592v1", "submitter": "AAFC", "gbrs_paired_asm": "GCF_022785925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/785/925/GCA_022785925.1_ASM2278592v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio piger" ], "sample_taxid": [ "901" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2640329", "Number of Sequences": "151", "Longest Sequences (bp)": "81829", "N50 (bp)": "27305", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "2216", "Average Protein Length": "318.0", "Coding Ratio (%)": "80.1", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 98.3003, "matched_fragments": 731, "total_fragments": 806, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 80.0036, "matched_fragments": 407, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio legallii", "strain": "strain=H1T", "accession": "GCA_004309735.1", "taxid": 571438, "species_taxid": 571438, "relation_to_type": "type", "validated": true, "ani": 79.1784, "matched_fragments": 298, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 78.5964, "matched_fragments": 191, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio oxamicus", "strain": "strain=NCIMB 9442", "accession": "GCA_015731765.1", "taxid": 32016, "species_taxid": 32016, "relation_to_type": "type", "validated": true, "ani": 78.5598, "matched_fragments": 200, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio intestinalis", "strain": "strain=DSM 11275", "accession": "GCA_014202345.1", "taxid": 58621, "species_taxid": 58621, "relation_to_type": "type", "validated": true, "ani": 78.4168, "matched_fragments": 212, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_000195755.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.8332, "matched_fragments": 158, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium escambiense", "strain": "strain=DSM 10707", "accession": "GCA_000428825.1", "taxid": 29503, "species_taxid": 29503, "relation_to_type": "type", "validated": true, "ani": 77.3154, "matched_fragments": 132, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=DSM 1382", "accession": "GCA_000429285.1", "taxid": 879, "species_taxid": 879, "relation_to_type": "type", "validated": true, "ani": 76.9325, "matched_fragments": 133, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000156375.1", "gtdb_species": "s__Desulfovibrio piger", "ani": 98.3003, "matched_fragments": 731, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0439, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "inconclusive" }, { "accession": "GCF_012843875.1", "gtdb_species": "s__Desulfovibrio sp900556755", "ani": 95.2819, "matched_fragments": 659, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0439, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 10, "status": "inconclusive" }, { "accession": "GCF_900116045.1", "gtdb_species": "s__Desulfovibrio piger_A", "ani": 93.8291, "matched_fragments": 688, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_019118745.1", "gtdb_species": "s__Desulfovibrio gallistercoris", "ani": 80.9209, "matched_fragments": 405, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019118345.1", "gtdb_species": "s__Desulfovibrio intestinavium", "ani": 80.3955, "matched_fragments": 359, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019114565.1", "gtdb_species": "s__Desulfovibrio intestinigallinarum", "ani": 80.2612, "matched_fragments": 306, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", 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"feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }