{
    "type": "genome",
    "identifier": "GCA_022786685.1",
    "organism": "Fusobacterium mortiferum",
    "title": "Fusobacterium mortiferum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "AAFC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022786685.1",
        "bioproject": "PRJNA629856",
        "biosample": "SAMN26927414",
        "wgs_master": "JALFWZ000000000.1",
        "refseq_category": "na",
        "taxid": "850",
        "species_taxid": "850",
        "organism_name": "Fusobacterium mortiferum",
        "infraspecific_name": "",
        "isolate": "SUG1088",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2278668v1",
        "submitter": "AAFC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/786/685/GCA_022786685.1_ASM2278668v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium mortiferum"
        ],
        "sample_taxid": [
            "850"
        ],
        "sample_host_organism": [
            "Sus scrofa domesticus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada:Lacombe"
        ],
        "sample_host_location_id": [],
        "data_size": "0.695 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2579228",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "215923",
        "N50 (bp)": "92669",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.0",
        "Number of CDSs": "2401",
        "Average Protein Length": "324.3",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fusobacterium necrogenes",
                "strain": "strain=NCTC10723",
                "accession": "GCA_900450765.1",
                "taxid": 858,
                "species_taxid": 858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4194,
                "matched_fragments": 499,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
                "strain": "strain=ATCC 49185",
                "accession": "GCA_000158315.2",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7477,
                "matched_fragments": 310,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
                "strain": "strain=ATCC 49185",
                "accession": "GCA_003019675.1",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.695,
                "matched_fragments": 308,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium varium",
                "strain": "strain=NCTC10560",
                "accession": "GCA_900637705.1",
                "taxid": 856,
                "species_taxid": 856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5938,
                "matched_fragments": 333,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
                "accession": "GCA_000622245.1",
                "taxid": 852,
                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0102,
                "matched_fragments": 235,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium ceti",
                "strain": "strain=ATCC 700028",
                "accession": "GCA_900167275.1",
                "taxid": 180163,
                "species_taxid": 180163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9895,
                "matched_fragments": 196,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium canifelinum",
                "strain": "strain=FDAARGOS_1126",
                "accession": "GCA_016724785.1",
                "taxid": 285729,
                "species_taxid": 285729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9892,
                "matched_fragments": 142,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=ChDC F128",
                "accession": "GCA_000292935.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8923,
                "matched_fragments": 139,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium somerae",
                "strain": "strain=ATCC BAA-474",
                "accession": "GCA_000479045.1",
                "taxid": 188913,
                "species_taxid": 188913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6938,
                "matched_fragments": 181,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium sporogenes",
                "strain": "strain=NCTC13020",
                "accession": "GCA_900461305.1",
                "taxid": 1509,
                "species_taxid": 1509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8508,
                "matched_fragments": 74,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter mytili",
                "strain": "strain=LMG 24559",
                "accession": "GCA_003346775.1",
                "taxid": 603050,
                "species_taxid": 603050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6257,
                "matched_fragments": 56,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000158195.2",
                "gtdb_species": "s__Fusobacterium_A mortiferum",
                "ani": 99.0639,
                "matched_fragments": 743,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900450765.1",
                "gtdb_species": "s__Fusobacterium_A necrogenes",
                "ani": 88.4271,
                "matched_fragments": 498,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905193685.1",
                "gtdb_species": "s__Fusobacterium_A sp900555485",
                "ani": 85.5603,
                "matched_fragments": 523,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016900045.1",
                "gtdb_species": "s__Fusobacterium_A sp900549465",
                "ani": 84.3221,
                "matched_fragments": 520,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900764925.1",
                "gtdb_species": "s__Fusobacterium_A sp900764925",
                "ani": 84.1606,
                "matched_fragments": 451,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019012925.1",
                "gtdb_species": "s__Fusobacterium_A sp019012925",
                "ani": 81.8316,
                "matched_fragments": 430,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014337255.1",
                "gtdb_species": "s__Fusobacterium_A sp900015295",
                "ani": 79.6,
                "matched_fragments": 308,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.45",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900637705.1",
                "gtdb_species": "s__Fusobacterium_A varium",
                "ani": 78.5696,
                "matched_fragments": 334,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 10,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.176,
        "doubling_h": -0.328,
        "growth_tmp": 37.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 2704108.0,
        "gc_content": 29.2,
        "coding_genes": 2537.0,
        "rRNA16S_genes": 5.708,
        "tRNA_genes": 67.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Fusobacteriaceae",
        "g__Fusobacterium_A",
        "s__Fusobacterium_A mortiferum"
    ],
    "_genome_taxon": [
        "Fusobacterium",
        "mortiferum",
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Fusobacteriaceae",
        "g__Fusobacterium_A",
        "s__Fusobacterium_A mortiferum",
        "Bacteria",
        "Fusobacteriota",
        "Fusobacteriia",
        "Fusobacteriales",
        "Fusobacteriaceae",
        "Fusobacterium",
        "A",
        "Fusobacterium",
        "A",
        "mortiferum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}