{
    "type": "genome",
    "identifier": "GCA_022792215.1",
    "organism": "Lachnospira sp.",
    "title": "Lachnospira sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Oak Ridge National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022792215.1",
        "bioproject": "PRJNA603829",
        "biosample": "SAMN14274016",
        "wgs_master": "JAAWAI000000000.1",
        "refseq_category": "na",
        "taxid": "2049031",
        "species_taxid": "2049031",
        "organism_name": "Lachnospira sp.",
        "infraspecific_name": "",
        "isolate": "ABMPRH_320_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2279221v1",
        "submitter": "Oak Ridge National Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/792/215/GCA_022792215.1_ASM2279221v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnospira sp."
        ],
        "sample_taxid": [
            "2049031"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Knoxville, TN"
        ],
        "sample_host_location_id": [],
        "data_size": "0.851 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3075964",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "411561",
        "N50 (bp)": "117801",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.0",
        "Number of CDSs": "2762",
        "Average Protein Length": "314.4",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_910589305.1",
                "gtdb_species": "s__Lachnospira sp910589305",
                "ani": 99.9885,
                "matched_fragments": 977,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_910587485.1",
                "gtdb_species": "s__Lachnospira sp910587485",
                "ani": 90.9906,
                "matched_fragments": 827,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910585095.1",
                "gtdb_species": "s__Lachnospira sp910585095",
                "ani": 89.6492,
                "matched_fragments": 827,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014287955.1",
                "gtdb_species": "s__Lachnospira sp900316325",
                "ani": 77.2921,
                "matched_fragments": 151,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.35",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_900547255.1",
                "gtdb_species": "s__Lachnospira sp900547255",
                "ani": 77.1411,
                "matched_fragments": 103,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000437735.1",
                "gtdb_species": "s__Lachnospira sp000437735",
                "ani": 76.8945,
                "matched_fragments": 85,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_002394205.1",
                "gtdb_species": "s__Lachnospira sp002394205",
                "ani": 76.8019,
                "matched_fragments": 77,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017397445.1",
                "gtdb_species": "s__Lachnospira sp017397445",
                "ani": 76.7949,
                "matched_fragments": 75,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900112995.1",
                "gtdb_species": "s__Lachnospira rogosae_A",
                "ani": 76.7862,
                "matched_fragments": 97,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_017626275.1",
                "gtdb_species": "s__Lachnospira sp017626275",
                "ani": 76.7207,
                "matched_fragments": 57,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900552795.1",
                "gtdb_species": "s__Lachnospira sp900552795",
                "ani": 76.6287,
                "matched_fragments": 110,
                "total_fragments": 1006,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 38.0,
        "optimum_ph": null,
        "genome_size": 2724871.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira sp910589305"
    ],
    "_genome_taxon": [
        "Lachnospira",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira sp910589305",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Lachnospira",
        "Lachnospira",
        "sp910589305"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}