{
    "type": "genome",
    "identifier": "GCA_022793595.1",
    "organism": "Lachnospiraceae bacterium",
    "title": "Lachnospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Oak Ridge National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022793595.1",
        "bioproject": "PRJNA603829",
        "biosample": "SAMN14274001",
        "wgs_master": "JAAWDD000000000.1",
        "refseq_category": "na",
        "taxid": "1898203",
        "species_taxid": "1898203",
        "organism_name": "Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "ABMPRH_310_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2279359v1",
        "submitter": "Oak Ridge National Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/793/595/GCA_022793595.1_ASM2279359v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "1898203"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Knoxville, TN"
        ],
        "sample_host_location_id": [],
        "data_size": "0.923 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3239540",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "152516",
        "N50 (bp)": "59518",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.4",
        "Number of CDSs": "2964",
        "Average Protein Length": "319.7",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Schaedlerella arabinosiphila",
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                "accession": "GCA_003885045.1",
                "taxid": 2044587,
                "species_taxid": 2044587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1317,
                "matched_fragments": 91,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilistercora timonensis",
                "strain": "strain=Marseille-P3756",
                "accession": "GCA_900312975.1",
                "taxid": 2086584,
                "species_taxid": 2086584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6127,
                "matched_fragments": 80,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diplocloster agilis",
                "strain": "strain=ASD5720",
                "accession": "GCA_019042275.1",
                "taxid": 2850323,
                "species_taxid": 2850323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4295,
                "matched_fragments": 60,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster asparagiformis",
                "strain": "strain=DSM 15981",
                "accession": "GCA_025149125.1",
                "taxid": 333367,
                "species_taxid": 333367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4173,
                "matched_fragments": 78,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia producta",
                "strain": "strain=ATCC 27340",
                "accession": "GCA_000373885.1",
                "taxid": 33035,
                "species_taxid": 33035,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.1466,
                "matched_fragments": 53,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia coccoides",
                "strain": "strain=NCTC11035",
                "accession": "GCA_900461125.1",
                "taxid": 1532,
                "species_taxid": 1532,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0107,
                "matched_fragments": 58,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia coccoides",
                "strain": "strain=DSM 935",
                "accession": "GCA_004340925.1",
                "taxid": 1532,
                "species_taxid": 1532,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9396,
                "matched_fragments": 56,
                "total_fragments": 1038,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_910588295.1",
                "gtdb_species": "s__UBA11957 sp910588295",
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                "matched_fragments": 944,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA11957",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003542935.1",
                "gtdb_species": "s__UBA11957 sp003542935",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA11957",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018223385.1",
                "gtdb_species": "s__JAGTTR01 sp018223385",
                "ani": 77.1537,
                "matched_fragments": 68,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__JAGTTR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018713585.1",
                "gtdb_species": "s__Pullilachnospira stercoravium",
                "ani": 77.0832,
                "matched_fragments": 102,
                "total_fragments": 1038,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pullilachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.85",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_016301965.1",
                "gtdb_species": "s__UBA11957 sp016301965",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA11957",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019120315.1",
                "gtdb_species": "s__Ruminococcus_G avistercoris",
                "ani": 76.8951,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_G",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018380885.1",
                "gtdb_species": "s__Enterocloster sp900555905",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.89",
                "min_intra_species_ani": "98.89",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018711815.1",
                "gtdb_species": "s__Egerieimonas intestinavium",
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                "matched_fragments": 114,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Egerieimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019119815.1",
                "gtdb_species": "s__Eisenbergiella intestinipullorum",
                "ani": 76.5438,
                "matched_fragments": 51,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella",
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                "mean_intra_species_ani": "99.95",
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            },
            {
                "accession": "GCA_018374355.1",
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                "matched_fragments": 63,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oliverpabstia",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002361955.1",
                "gtdb_species": "s__CAG-56 sp002361955",
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            },
            {
                "accession": "GCF_016899975.1",
                "gtdb_species": "s__Fusicatenibacter sp900543115",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Fusicatenibacter",
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                "mean_intra_species_ani": "98.27",
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                "num_clustered_genomes": 8,
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            },
            {
                "accession": "GCA_018715565.1",
                "gtdb_species": "s__Ventrimonas merdavium",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas",
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                "mean_intra_species_ani": "99.46",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.277,
        "doubling_h": 0.394,
        "growth_tmp": 37.0,
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        "coding_genes": 3283.347,
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        "gram_stain": 0.885,
        "sporulation": 0.414,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.033,
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__UBA11957",
        "s__UBA11957 sp910588295"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__UBA11957",
        "s__UBA11957 sp910588295",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "UBA11957",
        "UBA11957",
        "sp910588295"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}