{
    "type": "genome",
    "identifier": "GCA_022793875.1",
    "organism": "Clostridia bacterium",
    "title": "Clostridia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Oak Ridge National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022793875.1",
        "bioproject": "PRJNA603829",
        "biosample": "SAMN14274073",
        "wgs_master": "JAAWDR000000000.1",
        "refseq_category": "na",
        "taxid": "2044939",
        "species_taxid": "2044939",
        "organism_name": "Clostridia bacterium",
        "infraspecific_name": "",
        "isolate": "ABMPRH_61_2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2279387v1",
        "submitter": "Oak Ridge National Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/793/875/GCA_022793875.1_ASM2279387v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridia bacterium"
        ],
        "sample_taxid": [
            "2044939"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Knoxville, TN"
        ],
        "sample_host_location_id": [],
        "data_size": "0.491 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 84.09,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1831669",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "166745",
        "N50 (bp)": "47150",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "26.4",
        "Number of CDSs": "1887",
        "Average Protein Length": "273.4",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium nigeriense",
                "strain": "strain=Marseille-P2414",
                "accession": "GCA_900086595.1",
                "taxid": 1805470,
                "species_taxid": 1805470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1403,
                "matched_fragments": 61,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gottschalkia purinilytica",
                "strain": "strain=DSM 1384",
                "accession": "GCA_001190785.1",
                "taxid": 1503,
                "species_taxid": 1503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9694,
                "matched_fragments": 50,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium tetanomorphum",
                "strain": "strain=DSM 4474",
                "accession": "GCA_017873215.1",
                "taxid": 1553,
                "species_taxid": 1553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9097,
                "matched_fragments": 53,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacter bartlettii",
                "strain": "strain=DSM 16795",
                "accession": "GCA_025148965.1",
                "taxid": 261299,
                "species_taxid": 261299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8549,
                "matched_fragments": 51,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacter bartlettii",
                "strain": "strain=DSM 16795",
                "accession": "GCA_000154445.1",
                "taxid": 261299,
                "species_taxid": 261299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8514,
                "matched_fragments": 52,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium moniliforme",
                "strain": "strain=DSM 3984",
                "accession": "GCA_017873235.1",
                "taxid": 39489,
                "species_taxid": 39489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8379,
                "matched_fragments": 68,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium sporogenes",
                "strain": "strain=NCIMB 10696",
                "accession": "GCA_000973705.1",
                "taxid": 1509,
                "species_taxid": 1509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8371,
                "matched_fragments": 60,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium sporogenes",
                "strain": "strain=NCTC13020",
                "accession": "GCA_900461305.1",
                "taxid": 1509,
                "species_taxid": 1509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8282,
                "matched_fragments": 60,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium sporogenes",
                "strain": "strain=DSM 795",
                "accession": "GCA_001020205.1",
                "taxid": 1509,
                "species_taxid": 1509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8282,
                "matched_fragments": 60,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium sporogenes",
                "strain": "strain=ATCC 3584",
                "accession": "GCA_002008145.1",
                "taxid": 1509,
                "species_taxid": 1509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8272,
                "matched_fragments": 62,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium sporogenes",
                "strain": "strain=DSM 795",
                "accession": "GCA_000685115.1",
                "taxid": 1509,
                "species_taxid": 1509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8269,
                "matched_fragments": 60,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacter bartlettii",
                "strain": "strain=DSM 16795",
                "accession": "GCA_900167285.1",
                "taxid": 261299,
                "species_taxid": 261299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7987,
                "matched_fragments": 52,
                "total_fragments": 583,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 84.09,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017410505.1",
                "gtdb_species": "s__CAG-269 sp017410505",
                "ani": 82.697,
                "matched_fragments": 260,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000438255.1",
                "gtdb_species": "s__CAG-269 sp000438255",
                "ani": 81.824,
                "matched_fragments": 251,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.35",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900551615.1",
                "gtdb_species": "s__CAG-269 sp900551615",
                "ani": 81.8145,
                "matched_fragments": 283,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900753165.1",
                "gtdb_species": "s__CAG-269 sp900753165",
                "ani": 81.6424,
                "matched_fragments": 231,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001916005.1",
                "gtdb_species": "s__CAG-269 sp001916005",
                "ani": 81.4412,
                "matched_fragments": 277,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900552555.1",
                "gtdb_species": "s__CAG-269 sp900552555",
                "ani": 81.3361,
                "matched_fragments": 293,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001916065.1",
                "gtdb_species": "s__CAG-269 sp001916065",
                "ani": 81.129,
                "matched_fragments": 285,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_000435535.1",
                "gtdb_species": "s__CAG-269 sp000435535",
                "ani": 80.7835,
                "matched_fragments": 256,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905215845.1",
                "gtdb_species": "s__CAG-269 sp905215845",
                "ani": 79.5576,
                "matched_fragments": 130,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900554565.1",
                "gtdb_species": "s__CAG-269 sp900554565",
                "ani": 79.2002,
                "matched_fragments": 216,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900553985.1",
                "gtdb_species": "s__CAG-269 sp900553985",
                "ani": 79.0366,
                "matched_fragments": 234,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_904387305.1",
                "gtdb_species": "s__CAG-269 sp904387305",
                "ani": 78.7583,
                "matched_fragments": 200,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904419095.1",
                "gtdb_species": "s__CAG-269 sp904419095",
                "ani": 78.591,
                "matched_fragments": 180,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904419495.1",
                "gtdb_species": "s__CAG-269 sp904419495",
                "ani": 78.4048,
                "matched_fragments": 187,
                "total_fragments": 583,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__TANB77",
        "f__CAG-508",
        "g__CAG-269",
        "s__CAG-269 sp022793875"
    ],
    "_genome_taxon": [
        "Clostridia",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__TANB77",
        "f__CAG-508",
        "g__CAG-269",
        "s__CAG-269 sp022793875",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "TANB77",
        "CAG-508",
        "CAG-269",
        "CAG-269",
        "sp022793875"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}