{ "type": "genome", "identifier": "GCA_022796515.1", "organism": "Lachnospiraceae bacterium", "title": "Lachnospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Oak Ridge National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022796515.1", "bioproject": "PRJNA603829", "biosample": "SAMN14273775", "wgs_master": "JAAWIV000000000.1", "refseq_category": "na", "taxid": "1898203", "species_taxid": "1898203", "organism_name": "Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "ABMPRH_198_1_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2279651v1", "submitter": "Oak Ridge National Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/796/515/GCA_022796515.1_ASM2279651v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Lachnospiraceae bacterium" ], "sample_taxid": [ "1898203" ], "sample_host_organism": [ "Mus musculus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Knoxville, TN" ], "sample_host_location_id": [], "data_size": "1.248 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4426429", "Number of Sequences": "245", "Longest Sequences (bp)": "118291", "N50 (bp)": "24719", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "3881", "Average Protein Length": "330.8", "Coding Ratio (%)": "87.0", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 77.1959, "matched_fragments": 249, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_000158075.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 77.159, "matched_fragments": 239, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 76.618, "matched_fragments": 176, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium pacaense", "strain": "strain=Marseille-P3100", "accession": "GCA_900566185.1", "taxid": 1917870, "species_taxid": 1917870, "relation_to_type": "type", "validated": true, "ani": 76.5246, "matched_fragments": 70, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetatifactor muris", "strain": "strain=DSM 23669", "accession": "GCA_024623325.1", "taxid": 879566, "species_taxid": 879566, "relation_to_type": "type", "validated": true, "ani": 76.5172, "matched_fragments": 65, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4906, "matched_fragments": 169, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 76.489, "matched_fragments": 170, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 76.379, "matched_fragments": 184, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 76.3233, "matched_fragments": 188, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 76.3208, "matched_fragments": 183, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1353, "matched_fragments": 104, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_000160095.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1332, "matched_fragments": 104, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=ATCC 19403", "accession": "GCA_900105615.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 76.1009, "matched_fragments": 82, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=NCTC507", "accession": "GCA_900461315.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 76.0607, "matched_fragments": 84, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diplocloster modestus", "strain": "strain=ASD4241", "accession": "GCA_019042245.1", "taxid": 2850322, "species_taxid": 2850322, 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