{ "type": "genome", "identifier": "GCA_022796725.1", "organism": "Clostridia bacterium", "title": "Clostridia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Oak Ridge National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022796725.1", "bioproject": "PRJNA603829", "biosample": "SAMN14274056", "wgs_master": "JAAWJE000000000.1", "refseq_category": "na", "taxid": "2044939", "species_taxid": "2044939", "organism_name": "Clostridia bacterium", "infraspecific_name": "", "isolate": "ABMPRH_52_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/01", "asm_name": "ASM2279672v1", "submitter": "Oak Ridge National Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/796/725/GCA_022796725.1_ASM2279672v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-01", "dateModified": "2022-04-01", "datePublished": "2022-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridia bacterium" ], "sample_taxid": [ "2044939" ], "sample_host_organism": [ "Mus musculus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Knoxville, TN" ], "sample_host_location_id": [], "data_size": "0.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1239121", "Number of Sequences": "83", "Longest Sequences (bp)": "57175", "N50 (bp)": "18094", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "25.6", "Number of CDSs": "1219", "Average Protein Length": "284.5", "Coding Ratio (%)": "84.0", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Romboutsia lituseburensis", "strain": "strain=A25K", "accession": "GCA_900002825.1", "taxid": 1537, "species_taxid": 1537, "relation_to_type": "type", "validated": true, "ani": 75.0777, "matched_fragments": 57, "total_fragments": 373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium ihumii", "strain": "strain=AP5", "accession": "GCA_000612845.1", "taxid": 1470356, "species_taxid": 1470356, "relation_to_type": "type", "validated": true, "ani": 74.8056, "matched_fragments": 55, "total_fragments": 373, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017510525.1", "gtdb_species": "s__UMGS1994 sp017510525", "ani": 77.9694, "matched_fragments": 92, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1994", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017936925.1", "gtdb_species": "s__UMGS1994 sp017936925", "ani": 77.7494, "matched_fragments": 127, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1994", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003525075.1", "gtdb_species": "s__CAG-269 sp003525075", "ani": 77.5857, "matched_fragments": 97, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900553945.1", "gtdb_species": "s__UMGS1994 sp900553945", "ani": 77.5184, "matched_fragments": 123, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1994", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001915995.1", "gtdb_species": "s__CAG-269 sp001915995", "ani": 77.412, "matched_fragments": 99, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553685.1", "gtdb_species": "s__Scatovivens faecipullorum", "ani": 77.3962, "matched_fragments": 132, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017410505.1", "gtdb_species": "s__CAG-269 sp017410505", "ani": 77.3671, "matched_fragments": 84, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900551615.1", "gtdb_species": "s__CAG-269 sp900551615", "ani": 77.3628, "matched_fragments": 89, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_904381285.1", "gtdb_species": "s__RGIG8482 sp904381285", "ani": 77.3317, "matched_fragments": 97, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__RGIG8482", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017469445.1", "gtdb_species": "s__UMGS1864 sp017469445", "ani": 77.3086, "matched_fragments": 80, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1864", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905215935.1", "gtdb_species": "s__CAG-492 sp905215935", "ani": 77.2037, "matched_fragments": 115, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900556975.1", "gtdb_species": "s__UMGS1994 sp900556975", "ani": 77.1702, "matched_fragments": 110, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1994", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900770385.1", "gtdb_species": "s__HGM13634 sp900770385", "ani": 77.1546, "matched_fragments": 92, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__HGM13634", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900772235.1", "gtdb_species": "s__UMGS1933 sp900772235", "ani": 77.1449, "matched_fragments": 76, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1933", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002372935.1", "gtdb_species": "s__CAG-269 sp002372935", "ani": 77.1314, "matched_fragments": 58, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000438255.1", "gtdb_species": "s__CAG-269 sp000438255", "ani": 77.0785, "matched_fragments": 70, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900556695.1", "gtdb_species": "s__CAG-269 sp900556695", "ani": 76.9493, "matched_fragments": 74, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900555075.1", "gtdb_species": "s__UMGS1781 sp900555075", "ani": 76.922, "matched_fragments": 54, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1781", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.24", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001916005.1", "gtdb_species": "s__CAG-269 sp001916005", "ani": 76.7452, "matched_fragments": 105, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.70", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.66", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_015056485.1", "gtdb_species": "s__CAG-452 sp015056485", "ani": 76.6595, "matched_fragments": 94, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-452", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900554365.1", "gtdb_species": "s__CAG-269 sp900554365", "ani": 76.6367, "matched_fragments": 90, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_904384205.1", "gtdb_species": "s__CAG-269 sp904384205", "ani": 76.6171, "matched_fragments": 93, "total_fragments": 373, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__TANB77", "f__CAG-508", "g__UMGS1994", "s__UMGS1994 sp022796725" ], "_genome_taxon": [ "Clostridia", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__TANB77", "f__CAG-508", "g__UMGS1994", "s__UMGS1994 sp022796725", "Bacteria", "Bacillota", "A", "Clostridia", "TANB77", "CAG-508", "UMGS1994", "UMGS1994", "sp022796725" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }