{
    "type": "genome",
    "identifier": "GCA_022797995.1",
    "organism": "Lachnospiraceae bacterium",
    "title": "Lachnospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Oak Ridge National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022797995.1",
        "bioproject": "PRJNA603829",
        "biosample": "SAMN14273900",
        "wgs_master": "JAAWLQ000000000.1",
        "refseq_category": "na",
        "taxid": "1898203",
        "species_taxid": "1898203",
        "organism_name": "Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "ABMPRH_260_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2279799v1",
        "submitter": "Oak Ridge National Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/797/995/GCA_022797995.1_ASM2279799v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "1898203"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Knoxville, TN"
        ],
        "sample_host_location_id": [],
        "data_size": "1.175 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 57.06,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4121100",
        "Number of Sequences": "528",
        "Longest Sequences (bp)": "55606",
        "N50 (bp)": "9425",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.7",
        "Number of CDSs": "3264",
        "Average Protein Length": "320.2",
        "Coding Ratio (%)": "76.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acetatifactor muris",
                "strain": "strain=DSM 23669",
                "accession": "GCA_024623325.1",
                "taxid": 879566,
                "species_taxid": 879566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9152,
                "matched_fragments": 710,
                "total_fragments": 1113,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 57.06,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_910588225.1",
                "gtdb_species": "s__Acetatifactor sp910588225",
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                "matched_fragments": 656,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900248245.1",
                "gtdb_species": "s__Acetatifactor muris",
                "ani": 83.9187,
                "matched_fragments": 708,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910586775.1",
                "gtdb_species": "s__Acetatifactor sp910586775",
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                "matched_fragments": 264,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910584235.1",
                "gtdb_species": "s__Acetatifactor sp910584235",
                "ani": 78.0075,
                "matched_fragments": 249,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910577185.1",
                "gtdb_species": "s__Acetatifactor sp910577185",
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                "matched_fragments": 245,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910585805.1",
                "gtdb_species": "s__Acetatifactor sp910585805",
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                "matched_fragments": 278,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910586515.1",
                "gtdb_species": "s__Acetatifactor sp910586515",
                "ani": 77.5892,
                "matched_fragments": 226,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003612485.1",
                "gtdb_species": "s__Acetatifactor sp003612485",
                "ani": 77.5743,
                "matched_fragments": 215,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910578185.1",
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                "matched_fragments": 129,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017621075.1",
                "gtdb_species": "s__Acetatifactor sp017621075",
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                "matched_fragments": 80,
                "total_fragments": 1113,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_900550475.1",
                "gtdb_species": "s__CAG-510 sp900550475",
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                "matched_fragments": 58,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
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                "mean_intra_species_ani": "99.15",
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                "min_intra_species_af": "0.91",
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            },
            {
                "accession": "GCA_910578335.1",
                "gtdb_species": "s__CAG-510 sp910578335",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_017626325.1",
                "gtdb_species": "s__UBA3282 sp017626325",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3282",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_900551115.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.277,
        "doubling_h": 0.394,
        "growth_tmp": 37.0,
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        "genome_size": 3641163.5,
        "gc_content": 42.852,
        "coding_genes": 3283.347,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.727,
        "gram_stain": 0.885,
        "sporulation": 0.414,
        "motility": 0.448,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.988,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.133,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.033,
        "vibrio_cell_shape": 0.033,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Acetatifactor",
        "s__Acetatifactor sp022797995"
    ],
    "_genome_taxon": [
        "Lachnospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Acetatifactor",
        "s__Acetatifactor sp022797995",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Acetatifactor",
        "Acetatifactor",
        "sp022797995"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}