{
    "type": "genome",
    "identifier": "GCA_022798005.1",
    "organism": "Thomasclavelia cocleata",
    "title": "Thomasclavelia cocleata",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Oak Ridge National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022798005.1",
        "bioproject": "PRJNA603829",
        "biosample": "SAMN14273551",
        "wgs_master": "JAAWLR000000000.1",
        "refseq_category": "na",
        "taxid": "69824",
        "species_taxid": "69824",
        "organism_name": "Thomasclavelia cocleata",
        "infraspecific_name": "",
        "isolate": "ABMPRH_11_1_2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/01",
        "asm_name": "ASM2279800v1",
        "submitter": "Oak Ridge National Laboratory",
        "gbrs_paired_asm": "GCF_022798005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/798/005/GCA_022798005.1_ASM2279800v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-01",
    "dateModified": "2022-04-01",
    "datePublished": "2022-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thomasclavelia cocleata"
        ],
        "sample_taxid": [
            "69824"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Knoxville, TN"
        ],
        "sample_host_location_id": [],
        "data_size": "0.681 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2483490",
        "Number of Sequences": "129",
        "Longest Sequences (bp)": "114125",
        "N50 (bp)": "28488",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.4",
        "Number of CDSs": "2237",
        "Average Protein Length": "297.6",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "[Clostridium] cocleatum",
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                "accession": "GCA_002803405.1",
                "taxid": 69824,
                "species_taxid": 69824,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.2822,
                "matched_fragments": 703,
                "total_fragments": 765,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] cocleatum",
                "strain": "strain=DSM 1551",
                "accession": "GCA_024622895.1",
                "taxid": 69824,
                "species_taxid": 69824,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.2176,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] cocleatum",
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                "accession": "GCA_900102365.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1829,
                "matched_fragments": 700,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] cocleatum",
                "strain": "strain=I50",
                "accession": "GCA_010206155.1",
                "taxid": 69824,
                "species_taxid": 69824,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1507,
                "matched_fragments": 715,
                "total_fragments": 765,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] saccharogumia",
                "strain": "strain=DSM 17460",
                "accession": "GCA_000686665.1",
                "taxid": 341225,
                "species_taxid": 341225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6124,
                "matched_fragments": 511,
                "total_fragments": 765,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] spiroforme",
                "strain": "strain=DSM 1552",
                "accession": "GCA_025149465.1",
                "taxid": 29348,
                "species_taxid": 29348,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.64,
                "matched_fragments": 434,
                "total_fragments": 765,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelatoclostridium ramosum",
                "strain": "strain=DSM 1402",
                "accession": "GCA_014131695.1",
                "taxid": 1547,
                "species_taxid": 1547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2575,
                "matched_fragments": 401,
                "total_fragments": 765,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacillus cateniformis",
                "strain": "strain=JCM 10604",
                "accession": "GCA_001312445.1",
                "taxid": 100884,
                "species_taxid": 100884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8728,
                "matched_fragments": 143,
                "total_fragments": 765,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900102365.1",
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                "ani": 98.2132,
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                "total_fragments": 765,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
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                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000508865.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000686665.1",
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                "matched_fragments": 510,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000154805.1",
                "gtdb_species": "s__Erysipelatoclostridium spiroforme",
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                "matched_fragments": 432,
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                "mean_intra_species_ani": "97.13",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 13,
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            },
            {
                "accession": "GCA_018369555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
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                "num_clustered_genomes": 70,
                "status": "-"
            },
            {
                "accession": "GCF_002160495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017889095.1",
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                "matched_fragments": 273,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Coprobacillaceae",
        "g__Thomasclavelia",
        "s__Thomasclavelia cocleata"
    ],
    "_genome_taxon": [
        "Thomasclavelia",
        "cocleata",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Coprobacillaceae",
        "g__Thomasclavelia",
        "s__Thomasclavelia cocleata",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Coprobacillaceae",
        "Thomasclavelia",
        "Thomasclavelia",
        "cocleata"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}