{ "type": "genome", "identifier": "GCA_022820375.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022820375.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072849", "wgs_master": "JAJEFP000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "p16x43bins.54", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282037v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/820/375/GCA_022820375.1_ASM2282037v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [ "Ircinia sp. 'Encrusting'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Panama: Bocas del Toro, Punta Caracol" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3923466", "Number of Sequences": "15", "Longest Sequences (bp)": "1319750", "N50 (bp)": "561761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "3401", "Average Protein Length": "341.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "2", "Number of tRNAs": "85", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halorhodospira neutriphila", "strain": "strain=DSM 15116", "accession": "GCA_016584055.1", "taxid": 168379, "species_taxid": 168379, "relation_to_type": "type", "validated": true, "ani": 76.192, "matched_fragments": 59, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 76.1695, "matched_fragments": 95, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Povalibacter uvarum", "strain": "strain=DSM 26723", "accession": "GCA_014202975.1", "taxid": 732238, "species_taxid": 732238, "relation_to_type": "type", "validated": true, "ani": 76.1255, "matched_fragments": 96, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 76.0358, "matched_fragments": 66, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.0032, "matched_fragments": 57, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 75.9786, "matched_fragments": 99, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas sangjuensis", "strain": "strain=DSM 28345", "accession": "GCA_010211755.1", "taxid": 1503750, "species_taxid": 1503750, "relation_to_type": "type", "validated": true, "ani": 75.9595, "matched_fragments": 92, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 75.9247, "matched_fragments": 63, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 75.8898, "matched_fragments": 77, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 75.8722, "matched_fragments": 64, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 75.826, "matched_fragments": 68, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 75.8065, "matched_fragments": 129, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas panaciterrae", "strain": "strain=Gsoil 068", "accession": "GCA_020511115.1", "taxid": 363885, "species_taxid": 363885, "relation_to_type": "type", "validated": true, "ani": 75.7993, "matched_fragments": 71, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.7957, "matched_fragments": 112, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas abyssi", "strain": "strain=XH031", "accession": "GCA_001482195.1", "taxid": 1247514, "species_taxid": 1247514, "relation_to_type": "type", "validated": true, "ani": 75.795, "matched_fragments": 83, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=3.5X", "accession": "GCA_000761445.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 75.6721, "matched_fragments": 82, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=DSM 107085", "accession": "GCA_014201555.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 75.6521, "matched_fragments": 82, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa halophila", "strain": "strain=DSM 6210", "accession": "GCA_016583825.1", "taxid": 69359, "species_taxid": 69359, "relation_to_type": "type", "validated": true, "ani": 75.596, "matched_fragments": 78, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 75.5386, "matched_fragments": 52, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 75.5386, "matched_fragments": 52, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera orenii", "strain": "strain=MK-B5", "accession": "GCA_003788635.1", "taxid": 856731, "species_taxid": 856731, "relation_to_type": "type", "validated": true, "ani": 75.5333, "matched_fragments": 79, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter prosperus", "strain": "strain=DSM 5130", "accession": "GCA_000754095.2", "taxid": 160660, "species_taxid": 160660, "relation_to_type": "type", "validated": true, "ani": 75.5288, "matched_fragments": 75, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter lithotrophicus", "strain": "strain=RBP-1", "accession": "GCA_012184415.1", "taxid": 2606681, "species_taxid": 2606681, "relation_to_type": "type", "validated": true, "ani": 75.4471, "matched_fragments": 84, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 75.3561, "matched_fragments": 55, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter aquaticus", "strain": "strain=DSM 21667", "accession": "GCA_004363655.1", "taxid": 520092, "species_taxid": 520092, "relation_to_type": "type", "validated": true, "ani": 75.2945, "matched_fragments": 83, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.2914, "matched_fragments": 81, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.2842, "matched_fragments": 78, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 75.2159, "matched_fragments": 67, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017577365.1", "gtdb_species": "s__ZC4RG20 sp017577365", "ani": 77.337, "matched_fragments": 254, "total_fragments": 1301, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__UBA6522;f__UBA6522;g__ZC4RG20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016927175.1", "gtdb_species": "s__ZC4RG20 sp016927175", "ani": 77.2223, "matched_fragments": 259, "total_fragments": 1301, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__UBA6522;f__UBA6522;g__ZC4RG20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011054615.1", "gtdb_species": "s__FEN-1219 sp011054615", "ani": 76.9831, "matched_fragments": 270, "total_fragments": 1301, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__XN24;f__XN24;g__XN24", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003242685.1", "gtdb_species": "s__ZC4RG24 sp003242685", "ani": 76.5521, "matched_fragments": 130, "total_fragments": 1301, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG24", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018241525.1", "gtdb_species": "s__SZAS-83 sp018241525", "ani": 76.5404, "matched_fragments": 156, "total_fragments": 1301, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEFQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903868595.1", "gtdb_species": "s__ZC4RG30 sp903868595", "ani": 75.9882, "matched_fragments": 88, "total_fragments": 1301, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__ZC4RG30", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014138265.1", "gtdb_species": "s__Dokdonella_A fugitiva_A", "ani": 75.9094, "matched_fragments": 136, "total_fragments": 1301, "gtdb_taxonomy": 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