{ "type": "genome", "identifier": "GCA_022820675.1", "organism": "Vicinamibacteria bacterium", "title": "Vicinamibacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022820675.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072951", "wgs_master": "JAJEFC000000000.1", "refseq_category": "na", "taxid": "2793154", "species_taxid": "2793154", "organism_name": "Vicinamibacteria bacterium", "infraspecific_name": "", "isolate": "p16x34bins.66", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282067v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/820/675/GCA_022820675.1_ASM2282067v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Vicinamibacteria bacterium" ], "sample_taxid": [ "2793154" ], "sample_host_organism": [ "Ircinia sp. 'Massive A pink'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Panama: Bocas del Toro, Inner Solarte" ], "sample_host_location_id": [], "data_size": "1.773 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6554762", "Number of Sequences": "441", "Longest Sequences (bp)": "119084", "N50 (bp)": "21984", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "5412", "Average Protein Length": "311.4", "Coding Ratio (%)": "77.1", "Number of rRNAs": "1", "Number of tRNAs": "57", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteitalea pratensis", "strain": "strain=DSM 100886; HEG_-6_39", "accession": 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2546226, "relation_to_type": "type", "validated": true, "ani": 74.9488, "matched_fragments": 124, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.9476, "matched_fragments": 319, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 74.9034, "matched_fragments": 161, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, 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71, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea montanisoli", "strain": "strain=SMC 257", "accession": "GCA_013363975.1", "taxid": 2741721, "species_taxid": 2741721, "relation_to_type": "type", "validated": true, "ani": 74.821, "matched_fragments": 373, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 74.811, "matched_fragments": 183, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 74.808, "matched_fragments": 261, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea lactucae", "strain": "strain=NEAU-YG30", "accession": "GCA_003313395.1", "taxid": 2249762, "species_taxid": 2249762, "relation_to_type": "type", "validated": true, "ani": 74.8037, "matched_fragments": 232, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineosporia rhizophila", "strain": "strain=JCM 9960", "accession": "GCA_021277265.1", "taxid": 84633, "species_taxid": 84633, "relation_to_type": "type", "validated": true, "ani": 74.8036, "matched_fragments": 186, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 74.7884, "matched_fragments": 68, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus poikilotrophus", "strain": "strain=DSM 44209", "accession": "GCA_900111455.1", "taxid": 1333667, "species_taxid": 1333667, "relation_to_type": "type", "validated": true, "ani": 74.7883, "matched_fragments": 237, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 74.7859, "matched_fragments": 67, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 74.7771, "matched_fragments": 251, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus praedator", 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