{ "type": "genome", "identifier": "GCA_022825945.1", "organism": "Pseudomonadales bacterium", "title": "Pseudomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022825945.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072801", "wgs_master": "JAJDVS000000000.1", "refseq_category": "na", "taxid": "1891229", "species_taxid": "1891229", "organism_name": "Pseudomonadales bacterium", "infraspecific_name": "", "isolate": "jk18x22bins.60", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282594v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/825/945/GCA_022825945.1_ASM2282594v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium" ], "sample_taxid": [ "1891229" ], "sample_host_organism": [ "Ircinia sp. 'BZ2'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belize: Mesoamerican Barrier Reef, Blue Ground" ], "sample_host_location_id": [], "data_size": "0.742 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2642140", "Number of Sequences": "113", "Longest Sequences (bp)": "114135", "N50 (bp)": "39423", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.7", "Number of CDSs": "2307", "Average Protein Length": "323.8", "Coding Ratio (%)": "84.8", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_900102665.1", 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89, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 75.8464, "matched_fragments": 74, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 75.7958, "matched_fragments": 53, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas otitidis", "strain": "strain=DSM 17224", "accession": "GCA_900111835.1", "taxid": 319939, "species_taxid": 319939, "relation_to_type": "suspected-type", "validated": true, "ani": 75.772, "matched_fragments": 78, "total_fragments": 821, "ani_threshold": 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}, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.7136, "matched_fragments": 62, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineobactrum salinum", "strain": "strain=M2", "accession": "GCA_010669285.1", "taxid": 2708301, "species_taxid": 2708301, "relation_to_type": "type", "validated": true, "ani": 75.7095, "matched_fragments": 52, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=JCM 21544", "accession": "GCA_900100285.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 75.685, "matched_fragments": 64, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", 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