{ "type": "genome", "identifier": "GCA_022826345.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022826345.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072784", "wgs_master": "JAJDVB000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "jk18x22bins.16", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282634v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/826/345/GCA_022826345.1_ASM2282634v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [ "Ircinia sp. 'BZ2'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belize: Mesoamerican Barrier Reef, Blue Ground" ], "sample_host_location_id": [], "data_size": "1.440 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5180572", "Number of Sequences": "231", "Longest Sequences (bp)": "131409", "N50 (bp)": "40005", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "4605", "Average Protein Length": "321.0", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.7131, "matched_fragments": 243, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.5164, "matched_fragments": 157, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibacterium hippocampi", "strain": "strain=CECT 7691", "accession": "GCA_900172325.1", "taxid": 745714, "species_taxid": 745714, "relation_to_type": "type", "validated": true, "ani": 76.4448, "matched_fragments": 190, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 76.4267, "matched_fragments": 258, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea sediminum", "strain": "strain=NBU1469", "accession": "GCA_014904705.1", "taxid": 2775867, "species_taxid": 2775867, "relation_to_type": "type", "validated": true, "ani": 76.4104, "matched_fragments": 141, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 76.318, "matched_fragments": 116, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibaculum baratangense", "strain": "strain=AMV1", "accession": "GCA_000496075.1", "taxid": 1358440, "species_taxid": 1358440, "relation_to_type": "type", "validated": true, "ani": 76.31, "matched_fragments": 157, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 76.2903, "matched_fragments": 167, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_014201415.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 76.2697, "matched_fragments": 146, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_018398355.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 76.2682, "matched_fragments": 150, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.1991, "matched_fragments": 229, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=CGMCC 1.15283", "accession": "GCA_014641535.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 76.195, "matched_fragments": 149, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 76.1623, "matched_fragments": 136, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 76.146, "matched_fragments": 165, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.1376, "matched_fragments": 297, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=DSM 133", "accession": "GCA_001548155.2", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 76.1128, "matched_fragments": 168, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.0868, "matched_fragments": 212, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum aminovorans", "strain": "strain=NBRC 15686", "accession": "GCA_022179725.1", "taxid": 269069, "species_taxid": 269069, "relation_to_type": "type", "validated": true, "ani": 75.9819, "matched_fragments": 146, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum rhodesianum", "strain": "strain=DSM 5687", "accession": "GCA_014199985.1", "taxid": 29427, "species_taxid": 29427, "relation_to_type": "type", "validated": true, "ani": 75.8788, "matched_fragments": 173, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella soli", "strain": "strain=NBRC 108950", "accession": "GCA_007992495.1", "taxid": 1230389, "species_taxid": 1230389, "relation_to_type": "type", "validated": true, "ani": 75.853, "matched_fragments": 273, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 75.7793, "matched_fragments": 165, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium goesingense", "strain": "strain=DSM 21331", "accession": "GCA_022179225.1", "taxid": 243690, "species_taxid": 243690, "relation_to_type": "type", "validated": true, "ani": 75.7772, "matched_fragments": 146, "total_fragments": 1610, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, 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}, { "accession": "GCF_014201415.1", "gtdb_species": "s__Chelatococcus_A composti", "ani": 76.2557, "matched_fragments": 147, "total_fragments": 1610, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Chelatococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002781745.1", "gtdb_species": "s__UBA1479 sp002781745", "ani": 76.244, "matched_fragments": 167, "total_fragments": 1610, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA1479", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000010725.1", 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