{ "type": "genome", "identifier": "GCA_022827145.1", "organism": "Candidatus Latescibacteria bacterium", "title": "Candidatus Latescibacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022827145.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072662", "wgs_master": "JAJDTK000000000.1", "refseq_category": "na", "taxid": "2053570", "species_taxid": "2053570", "organism_name": "Candidatus Latescibacteria bacterium", "infraspecific_name": "", "isolate": "jk18x1bzbins.19", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282714v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/827/145/GCA_022827145.1_ASM2282714v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Latescibacteria bacterium" ], "sample_taxid": [ "2053570" ], "sample_host_organism": [ "Ircinia felix" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belize: Mesoamerican Barrier Reef, Carrie Bow Cay" ], "sample_host_location_id": [], "data_size": "1.096 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3889421", "Number of Sequences": "27", "Longest Sequences (bp)": "533431", "N50 (bp)": "230195", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "3336", "Average Protein Length": "349.2", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 74.6446, "matched_fragments": 65, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009841265.1", "gtdb_species": "s__JAAXHH01 sp009841265", "ani": 91.296, "matched_fragments": 1113, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__JAAXHH01;c__JAAXHH01;o__JAAXHH01;f__JAAXHH01;g__JAAXHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009838645.1", "gtdb_species": "s__JAAXHH01 sp009838645", "ani": 91.2466, "matched_fragments": 1107, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__JAAXHH01;c__JAAXHH01;o__JAAXHH01;f__JAAXHH01;g__JAAXHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009835325.1", "gtdb_species": "s__JAAXHH01 sp009835325", "ani": 91.2259, "matched_fragments": 1045, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__JAAXHH01;c__JAAXHH01;o__JAAXHH01;f__JAAXHH01;g__JAAXHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009837395.1", "gtdb_species": "s__JAAXHH01 sp009837395", "ani": 91.0888, "matched_fragments": 1096, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__JAAXHH01;c__JAAXHH01;o__JAAXHH01;f__JAAXHH01;g__JAAXHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_012270975.1", "gtdb_species": "s__JAAXHH01 sp012270975", "ani": 86.7986, "matched_fragments": 1050, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__JAAXHH01;c__JAAXHH01;o__JAAXHH01;f__JAAXHH01;g__JAAXHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__JAAXHH01", "c__JAAXHH01", "o__JAAXHH01", "f__JAAXHH01", "g__JAAXHH01", "s__JAAXHH01 sp022821085" ], "_genome_taxon": [ "Candidatus", "Latescibacteria", "bacterium", "d__Bacteria", "p__JAAXHH01", "c__JAAXHH01", "o__JAAXHH01", "f__JAAXHH01", "g__JAAXHH01", "s__JAAXHH01 sp022821085", "Bacteria", "JAAXHH01", "JAAXHH01", "JAAXHH01", "JAAXHH01", "JAAXHH01", "JAAXHH01", "sp022821085" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }