{
    "type": "genome",
    "identifier": "GCA_022827345.1",
    "organism": "Gemmatimonadota bacterium",
    "title": "Gemmatimonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Stony Brook University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022827345.1",
        "bioproject": "PRJNA768976",
        "biosample": "SAMN22072587",
        "wgs_master": "JAJDTB000000000.1",
        "refseq_category": "na",
        "taxid": "2026742",
        "species_taxid": "2026742",
        "organism_name": "Gemmatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "jk18x11bins.40",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/06",
        "asm_name": "ASM2282734v1",
        "submitter": "Stony Brook University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/827/345/GCA_022827345.1_ASM2282734v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-06",
    "dateModified": "2022-04-06",
    "datePublished": "2022-04-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadota bacterium"
        ],
        "sample_taxid": [
            "2026742"
        ],
        "sample_host_organism": [
            "Ircinia campana"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Florida, Summerland Key"
        ],
        "sample_host_location_id": [],
        "data_size": "1.325 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4796200",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "443570",
        "N50 (bp)": "139609",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.7",
        "Number of CDSs": "3963",
        "Average Protein Length": "363.4",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5188,
                "matched_fragments": 113,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CECT 8660",
                "accession": "GCA_014198875.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4095,
                "matched_fragments": 113,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=DSM 29007",
                "accession": "GCA_014202995.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.405,
                "matched_fragments": 114,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1407,
                "matched_fragments": 156,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera aromatica",
                "strain": "strain=K172",
                "accession": "GCA_003030465.1",
                "taxid": 59405,
                "species_taxid": 59405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1347,
                "matched_fragments": 55,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedococcus cremeus",
                "strain": "strain=CGMCC 1.6963",
                "accession": "GCA_900111375.1",
                "taxid": 587636,
                "species_taxid": 587636,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0766,
                "matched_fragments": 76,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hymenobacter gummosus",
                "strain": "strain=KCTC 52166",
                "accession": "GCA_003970915.1",
                "taxid": 1776032,
                "species_taxid": 1776032,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9539,
                "matched_fragments": 57,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catellatospora paridis",
                "strain": "strain=NEAU-CL2",
                "accession": "GCA_009720365.1",
                "taxid": 1617086,
                "species_taxid": 1617086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9381,
                "matched_fragments": 120,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium azooxidifex",
                "strain": "strain=DSM 100211",
                "accession": "GCA_014196765.1",
                "taxid": 1636188,
                "species_taxid": 1636188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.897,
                "matched_fragments": 53,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus sulfidivorans",
                "strain": "strain=D-501",
                "accession": "GCA_013426975.1",
                "taxid": 639200,
                "species_taxid": 639200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8376,
                "matched_fragments": 70,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas naasensis",
                "strain": "strain=KIS18-15",
                "accession": "GCA_004792695.1",
                "taxid": 1344951,
                "species_taxid": 1344951,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8375,
                "matched_fragments": 69,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas naasensis",
                "strain": "strain=DSM 100060",
                "accession": "GCA_011762145.1",
                "taxid": 1344951,
                "species_taxid": 1344951,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8177,
                "matched_fragments": 73,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium aurulentum",
                "strain": "strain=SDU3-1",
                "accession": "GCA_005144635.2",
                "taxid": 2567896,
                "species_taxid": 2567896,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7889,
                "matched_fragments": 139,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Egicoccus halophilus",
                "strain": "strain=EGI 80432",
                "accession": "GCA_004300825.1",
                "taxid": 1670830,
                "species_taxid": 1670830,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7824,
                "matched_fragments": 77,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7297,
                "matched_fragments": 111,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella namucuonensis",
                "strain": "strain=CGMCC 1.11014",
                "accession": "GCA_900116645.1",
                "taxid": 1035707,
                "species_taxid": 1035707,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7267,
                "matched_fragments": 113,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentzea aerocolonigenes",
                "strain": "strain=DSM 40034",
                "accession": "GCA_024171805.1",
                "taxid": 68170,
                "species_taxid": 68170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6943,
                "matched_fragments": 101,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium saccharophilum",
                "strain": "strain=NBRC 108778",
                "accession": "GCA_007992455.1",
                "taxid": 1213358,
                "species_taxid": 1213358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6864,
                "matched_fragments": 56,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium saccharophilum",
                "strain": "strain=K-1",
                "accession": "GCA_008017435.1",
                "taxid": 1213358,
                "species_taxid": 1213358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6864,
                "matched_fragments": 56,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentzea aerocolonigenes",
                "strain": "strain=NRRL B-3298",
                "accession": "GCA_000719205.1",
                "taxid": 68170,
                "species_taxid": 68170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6733,
                "matched_fragments": 100,
                "total_fragments": 1559,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009838975.1",
                "gtdb_species": "s__Bin94 sp009838975",
                "ani": 82.7129,
                "matched_fragments": 965,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_009841165.1",
                "gtdb_species": "s__Bin94 sp009841165",
                "ani": 82.65,
                "matched_fragments": 906,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_009844885.1",
                "gtdb_species": "s__Bin94 sp009844885",
                "ani": 81.1121,
                "matched_fragments": 701,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002238865.1",
                "gtdb_species": "s__Bin94 sp002238865",
                "ani": 80.0942,
                "matched_fragments": 753,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009840215.1",
                "gtdb_species": "s__Bin94 sp009840215",
                "ani": 80.0298,
                "matched_fragments": 559,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.00",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009841475.1",
                "gtdb_species": "s__Bin94 sp009841475",
                "ani": 80.0263,
                "matched_fragments": 622,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "98.52",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_003695865.1",
                "gtdb_species": "s__J028 sp003695865",
                "ani": 76.401,
                "matched_fragments": 116,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__J028",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009692205.1",
                "gtdb_species": "s__UBA2982 sp009692205",
                "ani": 76.2546,
                "matched_fragments": 115,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2982",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007692605.1",
                "gtdb_species": "s__SLBA01 sp007692605",
                "ani": 76.1258,
                "matched_fragments": 93,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SLBA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007692665.1",
                "gtdb_species": "s__SKNW01 sp007692665",
                "ani": 76.0373,
                "matched_fragments": 92,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SKNW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007132965.1",
                "gtdb_species": "s__PWLA01 sp007132965",
                "ani": 75.862,
                "matched_fragments": 69,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__PWLA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_007130605.1",
                "gtdb_species": "s__SLBA01 sp007130605",
                "ani": 75.6961,
                "matched_fragments": 74,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SLBA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_015664885.1",
                "gtdb_species": "s__UBA1138 sp003447875",
                "ani": 75.675,
                "matched_fragments": 96,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA1138",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_007692505.1",
                "gtdb_species": "s__REBX01 sp007692505",
                "ani": 75.6308,
                "matched_fragments": 77,
                "total_fragments": 1559,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__REBX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Longimicrobiales",
        "f__UBA6960",
        "g__Bin94",
        "s__Bin94 sp022827345"
    ],
    "_genome_taxon": [
        "Gemmatimonadota",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Longimicrobiales",
        "f__UBA6960",
        "g__Bin94",
        "s__Bin94 sp022827345",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Longimicrobiales",
        "UBA6960",
        "Bin94",
        "Bin94",
        "sp022827345"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        },
        {
            "id": "MEO_0000023",
            "label": "sea"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}