{ "type": "genome", "identifier": "GCA_022827425.1", "organism": "Pseudomonadales bacterium", "title": "Pseudomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022827425.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072585", "wgs_master": "JAJDSZ000000000.1", "refseq_category": "na", "taxid": "1891229", "species_taxid": "1891229", "organism_name": "Pseudomonadales bacterium", "infraspecific_name": "", "isolate": "jk18x11bins.34", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282742v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/827/425/GCA_022827425.1_ASM2282742v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium" ], "sample_taxid": [ "1891229" ], "sample_host_organism": [ "Ircinia campana" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Florida, Summerland Key" ], "sample_host_location_id": [], "data_size": "0.805 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2861414", "Number of Sequences": "130", "Longest Sequences (bp)": "105676", "N50 (bp)": "33504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "2418", "Average Protein Length": "331.5", "Coding Ratio (%)": "84.0", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas gudaonensis", "strain": "strain=CGMCC 1.6133", "accession": "GCA_900100195.1", "taxid": 376427, "species_taxid": 376427, "relation_to_type": "type", "validated": true, "ani": 76.4793, "matched_fragments": 60, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.4612, "matched_fragments": 50, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pellis", "strain": "strain=L5", "accession": "GCA_008297955.1", "taxid": 2606936, "species_taxid": 2606936, "relation_to_type": "type", "validated": true, "ani": 76.2657, "matched_fragments": 54, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_900102665.1", "taxid": 237610, "species_taxid": 237610, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0292, "matched_fragments": 76, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzihabitans", "strain": "strain=DSM 6835", "accession": "GCA_012986195.1", "taxid": 47885, "species_taxid": 47885, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0184, "matched_fragments": 72, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzihabitans", "strain": "strain=NBRC 102199", "accession": "GCA_000730625.1", "taxid": 47885, "species_taxid": 47885, "relation_to_type": "suspected-type", "validated": true, "ani": 75.985, "matched_fragments": 72, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_012985915.1", "taxid": 237610, "species_taxid": 237610, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9694, "matched_fragments": 79, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 75.9496, "matched_fragments": 86, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 75.9477, "matched_fragments": 80, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 75.9292, "matched_fragments": 91, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 75.8862, "matched_fragments": 78, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_000802425.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 75.8862, "matched_fragments": 78, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 75.8852, "matched_fragments": 80, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 75.8845, "matched_fragments": 80, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 75.8046, "matched_fragments": 88, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineobactrum salinum", "strain": "strain=M2", "accession": "GCA_010669285.1", "taxid": 2708301, "species_taxid": 2708301, "relation_to_type": "type", "validated": true, "ani": 75.7788, "matched_fragments": 57, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 75.7775, "matched_fragments": 95, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas otitidis", "strain": "strain=DSM 17224", "accession": "GCA_900111835.1", "taxid": 319939, "species_taxid": 319939, "relation_to_type": "suspected-type", "validated": true, "ani": 75.6594, "matched_fragments": 84, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 75.6429, "matched_fragments": 87, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.6272, "matched_fragments": 87, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 75.5735, "matched_fragments": 60, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitrititolerans", "strain": "strain=GL14", "accession": "GCA_003696285.1", "taxid": 2482751, "species_taxid": 2482751, "relation_to_type": "type", "validated": true, "ani": 75.5665, "matched_fragments": 62, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer rhizosphaerae", "strain": "strain=CECT 8799", "accession": "GCA_014191725.1", "taxid": 1562603, "species_taxid": 1562603, "relation_to_type": "type", "validated": true, "ani": 75.562, "matched_fragments": 62, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluvialis", "strain": "strain=CCM 8778", "accession": "GCA_014635625.1", "taxid": 1793966, "species_taxid": 1793966, "relation_to_type": "suspected-type", "validated": true, "ani": 75.5406, "matched_fragments": 52, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_000813265.1", "taxid": 300, "species_taxid": 300, "relation_to_type": "suspected-type", "validated": true, "ani": 75.4183, "matched_fragments": 58, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 75.368, "matched_fragments": 80, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria aurantia", "strain": "strain=DSM 21353", "accession": "GCA_000382245.1", "taxid": 504092, "species_taxid": 504092, "relation_to_type": "type", "validated": true, "ani": 75.2112, "matched_fragments": 51, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus respiraculi", "strain": "strain=LMG 21510", "accession": "GCA_914271545.1", "taxid": 195930, 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