{ "type": "genome", "identifier": "GCA_022827965.1", "organism": "Candidatus Poribacteria bacterium", "title": "Candidatus Poribacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022827965.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072973", "wgs_master": "JAJEIU000000000.1", "refseq_category": "na", "taxid": "2026781", "species_taxid": "2026781", "organism_name": "Candidatus Poribacteria bacterium", "infraspecific_name": "", "isolate": "p16x63bins.74", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282796v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/827/965/GCA_022827965.1_ASM2282796v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Poribacteria bacterium" ], "sample_taxid": [ "2026781" ], "sample_host_organism": [ "Ircinia sp. 'Massive B'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Panama: Bocas del Toro, STRI Point" ], "sample_host_location_id": [], "data_size": "1.586 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.2, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5541858", "Number of Sequences": "86", "Longest Sequences (bp)": "337746", "N50 (bp)": "110015", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.9", "Number of CDSs": "4591", "Average Protein Length": "352.4", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 91.2, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000406005.1", "gtdb_species": "s__WGA-3G sp000406005", "ani": 88.7953, "matched_fragments": 1276, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012270865.1", "gtdb_species": "s__WGA-3G sp012270865", "ani": 85.1316, "matched_fragments": 1234, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007571355.1", "gtdb_species": "s__WGA-3G sp007571355", "ani": 83.3244, "matched_fragments": 959, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009843785.1", "gtdb_species": "s__WGA-3G sp009843785", "ani": 80.9267, "matched_fragments": 1180, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009835515.1", "gtdb_species": "s__WGA-3G sp009835515", "ani": 80.2823, "matched_fragments": 799, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003635195.1", "gtdb_species": "s__WGA-3G sp003635195", "ani": 80.2127, "matched_fragments": 1167, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012270875.1", "gtdb_species": "s__WGA-3G sp012270875", "ani": 80.0328, "matched_fragments": 984, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003635255.1", "gtdb_species": "s__WGA-3G sp003635255", "ani": 80.0072, "matched_fragments": 980, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009841255.1", "gtdb_species": "s__WGA-3G sp009841255", "ani": 78.1133, "matched_fragments": 761, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__WGA-3G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009845505.1", "gtdb_species": "s__VXZL01 sp009845505", "ani": 77.8282, "matched_fragments": 590, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Poribacteria;c__WGA-4E;o__WGA-4E;f__WGA-3G;g__VXZL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Poribacteria", "c__WGA-4E", "o__WGA-4E", "f__WGA-3G", "g__WGA-3G", "s__WGA-3G sp022823085" ], "_genome_taxon": [ "Candidatus", "Poribacteria", "bacterium", "d__Bacteria", "p__Poribacteria", "c__WGA-4E", "o__WGA-4E", "f__WGA-3G", "g__WGA-3G", "s__WGA-3G sp022823085", "Bacteria", "Poribacteria", "WGA-4E", "WGA-4E", "WGA-3G", "WGA-3G", "WGA-3G", "sp022823085" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" }, { "id": "MEO_0000023", "label": "sea" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }