{ "type": "genome", "identifier": "GCA_022828135.1", "organism": "Acidimicrobiia bacterium", "title": "Acidimicrobiia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022828135.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072966", "wgs_master": "JAJEJB000000000.1", "refseq_category": "na", "taxid": "2080302", "species_taxid": "2080302", "organism_name": "Acidimicrobiia bacterium", "infraspecific_name": "", "isolate": "p16x63bins.58", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282813v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/135/GCA_022828135.1_ASM2282813v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiia bacterium" ], "sample_taxid": [ "2080302" ], "sample_host_organism": [ "Ircinia sp. 'Massive B'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Panama: Bocas del Toro, STRI Point" ], "sample_host_location_id": [], "data_size": "1.010 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3688547", "Number of Sequences": "59", "Longest Sequences (bp)": "241006", "N50 (bp)": "109173", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "3396", "Average Protein Length": "333.1", "Coding Ratio (%)": "92.0", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.9876, "matched_fragments": 220, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.809, "matched_fragments": 143, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.715, "matched_fragments": 197, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.3906, "matched_fragments": 177, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter nonamiensis", "strain": "strain=YM16-303", "accession": "GCA_000350145.1", "taxid": 467093, "species_taxid": 467093, "relation_to_type": "type", "validated": true, "ani": 76.2962, "matched_fragments": 90, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.2692, "matched_fragments": 146, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 75.7259, "matched_fragments": 105, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 75.617, "matched_fragments": 78, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.4803, "matched_fragments": 73, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peterkaempfera bronchialis", "strain": "strain=DSM 106435", "accession": "GCA_003258605.2", "taxid": 2126346, "species_taxid": 2126346, "relation_to_type": "type", "validated": true, "ani": 75.4319, "matched_fragments": 158, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 75.4037, "matched_fragments": 159, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crossiella cryophila", "strain": "strain=DSM 44230", "accession": "GCA_014204915.1", "taxid": 43355, "species_taxid": 43355, "relation_to_type": "type", "validated": true, "ani": 75.3924, "matched_fragments": 170, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora olivasterospora", "strain": "strain=DSM 43868", "accession": "GCA_007830265.1", "taxid": 1880, "species_taxid": 1880, "relation_to_type": "type", "validated": true, "ani": 75.3831, "matched_fragments": 168, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allokutzneria albata", "strain": "strain=DSM 44149", "accession": "GCA_900103775.1", "taxid": 211114, "species_taxid": 211114, "relation_to_type": "type", "validated": true, "ani": 75.3466, "matched_fragments": 138, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allokutzneria albata", "strain": "strain=NRRL B-24461", "accession": "GCA_000720955.1", "taxid": 211114, "species_taxid": 211114, "relation_to_type": "type", "validated": true, "ani": 75.2949, "matched_fragments": 132, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces qinglanensis", "strain": "strain=172205", "accession": "GCA_003265665.1", "taxid": 943816, "species_taxid": 943816, "relation_to_type": "type", "validated": true, "ani": 75.287, "matched_fragments": 128, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora zingiberis", "strain": "strain=PLAI 1-1", "accession": "GCA_004331455.1", "taxid": 2053011, "species_taxid": 2053011, "relation_to_type": "type", "validated": true, "ani": 75.2618, "matched_fragments": 136, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces smyrnaeus", "strain": "strain=DSM 42105", "accession": "GCA_017676345.1", "taxid": 1387713, "species_taxid": 1387713, "relation_to_type": "type", "validated": true, "ani": 75.2469, "matched_fragments": 126, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces qinglanensis", "strain": "strain=CGMCC 4.6825", "accession": "GCA_900111245.1", "taxid": 943816, "species_taxid": 943816, "relation_to_type": "type", "validated": true, "ani": 75.2313, "matched_fragments": 131, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces canus", "strain": "strain=DSM 40017", "accession": "GCA_001514145.1", "taxid": 58343, "species_taxid": 58343, "relation_to_type": "suspected-type", "validated": true, "ani": 75.1576, "matched_fragments": 158, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 75.1502, "matched_fragments": 200, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium vinaceum", "strain": "strain=NRRL B-16297", "accession": "GCA_019904175.1", "taxid": 53362, "species_taxid": 53362, "relation_to_type": "type", "validated": true, "ani": 75.0488, "matched_fragments": 224, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=LMG 2196", "accession": "GCA_902832765.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 74.9341, "matched_fragments": 93, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia glumae", "strain": "strain=ATCC 33617", "accession": "GCA_000960995.1", "taxid": 337, "species_taxid": 337, "relation_to_type": "type", "validated": true, "ani": 74.9336, "matched_fragments": 94, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus tamaricis", "strain": "strain=CLL3-39", "accession": "GCA_012070395.1", "taxid": 2705421, "species_taxid": 2705421, "relation_to_type": "type", "validated": true, "ani": 74.8127, "matched_fragments": 65, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus tamaricis", "strain": "strain=CLL3-39", "accession": "GCA_010435925.1", "taxid": 2705421, "species_taxid": 2705421, "relation_to_type": "type", "validated": true, "ani": 74.8127, "matched_fragments": 65, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 74.8048, "matched_fragments": 82, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009842325.1", "gtdb_species": "s__VYCW01 sp009842325", "ani": 91.6414, "matched_fragments": 912, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009843915.1", "gtdb_species": "s__VYCW01 sp009843915", "ani": 91.4223, "matched_fragments": 837, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.78", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_009835735.1", "gtdb_species": "s__VYCW01 sp009835735", "ani": 90.9308, "matched_fragments": 777, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009844405.1", "gtdb_species": "s__VYCW01 sp009844405", "ani": 89.4018, "matched_fragments": 757, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_009840695.1", "gtdb_species": "s__VYCW01 sp009840695", "ani": 86.5768, "matched_fragments": 346, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009843735.1", "gtdb_species": "s__VYCW01 sp009843735", "ani": 85.6381, "matched_fragments": 771, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009837445.1", "gtdb_species": "s__VYCW01 sp009837445", "ani": 85.1384, "matched_fragments": 864, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__VYCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_016936035.1", "gtdb_species": "s__ZC4RG19 sp016936035", "ani": 75.9208, "matched_fragments": 141, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Aldehydirespiratoraceae", "g__Aldehydirespirator", "s__Aldehydirespirator sp022828135" ], "_genome_taxon": [ "Acidimicrobiia", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Aldehydirespiratoraceae", "g__Aldehydirespirator", "s__Aldehydirespirator sp022828135", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Aldehydirespiratoraceae", "Aldehydirespirator", "Aldehydirespirator", "sp022828135" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" }, { "id": "MEO_0000023", "label": "sea" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }