{ "type": "genome", "identifier": "GCA_022828205.1", "organism": "Acidimicrobiia bacterium", "title": "Acidimicrobiia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Stony Brook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022828205.1", "bioproject": "PRJNA768976", "biosample": "SAMN22072962", "wgs_master": "JAJEJF000000000.1", "refseq_category": "na", "taxid": "2080302", "species_taxid": "2080302", "organism_name": "Acidimicrobiia bacterium", "infraspecific_name": "", "isolate": "p16x63bins.43", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2282820v1", "submitter": "Stony Brook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/828/205/GCA_022828205.1_ASM2282820v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiia bacterium" ], "sample_taxid": [ "2080302" ], "sample_host_organism": [ "Ircinia sp. 'Massive B'" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Panama: Bocas del Toro, STRI Point" ], "sample_host_location_id": [], "data_size": "0.918 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3333816", "Number of Sequences": "225", "Longest Sequences (bp)": "111839", "N50 (bp)": "27714", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "2839", "Average Protein Length": "328.5", "Coding Ratio (%)": "83.9", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.5135, "matched_fragments": 160, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.4981, "matched_fragments": 117, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.3298, "matched_fragments": 122, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter nonamiensis", "strain": "strain=YM16-303", "accession": "GCA_000350145.1", "taxid": 467093, "species_taxid": 467093, "relation_to_type": "type", "validated": true, "ani": 76.3132, "matched_fragments": 89, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.2404, "matched_fragments": 151, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.1147, "matched_fragments": 159, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 75.7926, "matched_fragments": 121, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 75.2804, "matched_fragments": 78, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humi", "strain": "strain=DCY24", "accession": "GCA_006494775.1", "taxid": 449461, "species_taxid": 449461, "relation_to_type": "type", "validated": true, "ani": 75.2731, "matched_fragments": 104, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella rosea", "strain": "strain=KEMB 2255-458", "accession": "GCA_016806835.2", "taxid": 1817965, "species_taxid": 1817965, "relation_to_type": "type", "validated": true, "ani": 75.1349, "matched_fragments": 57, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pilimelia anulata", "strain": "strain=JCM 3090", "accession": "GCA_014647895.1", "taxid": 53371, "species_taxid": 53371, "relation_to_type": "type", "validated": true, "ani": 75.1174, "matched_fragments": 95, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 75.0556, "matched_fragments": 146, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Embleya hyalina", "strain": "strain=NBRC 13850", "accession": "GCA_003967355.1", "taxid": 516124, "species_taxid": 516124, "relation_to_type": "type", "validated": true, "ani": 75.0523, "matched_fragments": 111, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthonobacter albigriseus", "strain": "strain=KCTC 42450", "accession": "GCA_013839445.1", "taxid": 1683161, "species_taxid": 1683161, "relation_to_type": "type", "validated": true, "ani": 75.0104, "matched_fragments": 52, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 74.9397, "matched_fragments": 61, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 74.8985, "matched_fragments": 62, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 74.8588, "matched_fragments": 63, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus kandeliae", "strain": "strain=J103", "accession": "GCA_003073115.1", "taxid": 2073160, "species_taxid": 2073160, "relation_to_type": "type", "validated": true, "ani": 74.7767, "matched_fragments": 55, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009843525.1", "gtdb_species": "s__WTFX01 sp009843525", "ani": 89.3361, "matched_fragments": 777, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__TK06;g__WTFX01", "ani_circumscription_radius": 95.0, 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