{
    "type": "genome",
    "identifier": "GCA_022839145.1",
    "organism": "Aminobacterium sp.",
    "title": "Aminobacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Colorado State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022839145.1",
        "bioproject": "PRJNA818325",
        "biosample": "SAMN26856736",
        "wgs_master": "JALHFN000000000.1",
        "refseq_category": "na",
        "taxid": "1872491",
        "species_taxid": "1872491",
        "organism_name": "Aminobacterium sp.",
        "infraspecific_name": "",
        "isolate": "3-JJ_aug_S1_025",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/08",
        "asm_name": "ASM2283914v1",
        "submitter": "Colorado State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/839/145/GCA_022839145.1_ASM2283914v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-08",
    "dateModified": "2022-04-08",
    "datePublished": "2022-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aminobacterium sp."
        ],
        "sample_taxid": [
            "1872491"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.593 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2056526",
        "Number of Sequences": "137",
        "Longest Sequences (bp)": "124369",
        "N50 (bp)": "49220",
        "Gap Ratio (%)": "0.013810",
        "GCcontent (%)": "46.2",
        "Number of CDSs": "1895",
        "Average Protein Length": "311.4",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aminobacterium colombiense",
                "strain": "strain=DSM 12261",
                "accession": "GCA_000025885.1",
                "taxid": 81468,
                "species_taxid": 81468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0438,
                "matched_fragments": 542,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000025885.1",
                "gtdb_species": "s__Aminobacterium colombiense",
                "ani": 99.0438,
                "matched_fragments": 542,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminobacteriaceae;g__Aminobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002432275.1",
                "gtdb_species": "s__Aminobacterium sp002432275",
                "ani": 80.7698,
                "matched_fragments": 155,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminobacteriaceae;g__Aminobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.48",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.539,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.3,
        "genome_size": 2043279.8,
        "gc_content": 44.55,
        "coding_genes": 1873.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Synergistota",
        "c__Synergistia",
        "o__Synergistales",
        "f__Aminobacteriaceae",
        "g__Aminobacterium",
        "s__Aminobacterium colombiense"
    ],
    "_genome_taxon": [
        "Aminobacterium",
        "sp.",
        "d__Bacteria",
        "p__Synergistota",
        "c__Synergistia",
        "o__Synergistales",
        "f__Aminobacteriaceae",
        "g__Aminobacterium",
        "s__Aminobacterium colombiense",
        "Bacteria",
        "Synergistota",
        "Synergistia",
        "Synergistales",
        "Aminobacteriaceae",
        "Aminobacterium",
        "Aminobacterium",
        "colombiense"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}