{
    "type": "genome",
    "identifier": "GCA_022839835.1",
    "organism": "Methanothrix harundinacea",
    "title": "Methanothrix harundinacea",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Colorado State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022839835.1",
        "bioproject": "PRJNA818325",
        "biosample": "SAMN26856832",
        "wgs_master": "JALHJF000000000.1",
        "refseq_category": "na",
        "taxid": "301375",
        "species_taxid": "301375",
        "organism_name": "Methanothrix harundinacea",
        "infraspecific_name": "",
        "isolate": "7-NCT_033",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/08",
        "asm_name": "ASM2283983v1",
        "submitter": "Colorado State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/839/835/GCA_022839835.1_ASM2283983v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-08",
    "dateModified": "2022-04-08",
    "datePublished": "2022-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanothrix harundinacea"
        ],
        "sample_taxid": [
            "301375"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.718 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2523521",
        "Number of Sequences": "144",
        "Longest Sequences (bp)": "124680",
        "N50 (bp)": "33386",
        "Gap Ratio (%)": "0.009867",
        "GCcontent (%)": "56.2",
        "Number of CDSs": "2466",
        "Average Protein Length": "283.5",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001509375.1",
                "gtdb_species": "s__Methanothrix_A harundinacea_D",
                "ani": 99.413,
                "matched_fragments": 661,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.30",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002502785.1",
                "gtdb_species": "s__Methanothrix_A harundinacea_A",
                "ani": 83.6602,
                "matched_fragments": 522,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001602645.1",
                "gtdb_species": "s__Methanothrix_A sp001602645",
                "ani": 83.2926,
                "matched_fragments": 536,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "99.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000235565.1",
                "gtdb_species": "s__Methanothrix_A harundinacea_E",
                "ani": 83.0233,
                "matched_fragments": 525,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002506535.1",
                "gtdb_species": "s__Methanothrix_A harundinacea_B",
                "ani": 82.2786,
                "matched_fragments": 498,
                "total_fragments": 771,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanotrichales",
        "f__Methanotrichaceae",
        "g__Methanocrinis",
        "s__Methanocrinis harundinacea_D"
    ],
    "_genome_taxon": [
        "Methanothrix",
        "harundinacea",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanotrichales",
        "f__Methanotrichaceae",
        "g__Methanocrinis",
        "s__Methanocrinis harundinacea_D",
        "Archaea",
        "Halobacteriota",
        "Methanosarcinia",
        "Methanotrichales",
        "Methanotrichaceae",
        "Methanocrinis",
        "Methanocrinis",
        "harundinacea",
        "D"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}