{
    "type": "genome",
    "identifier": "GCA_022839965.1",
    "organism": "Bacteroidia bacterium",
    "title": "Bacteroidia bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Colorado State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022839965.1",
        "bioproject": "PRJNA818325",
        "biosample": "SAMN26856793",
        "wgs_master": "JALHHS000000000.1",
        "refseq_category": "na",
        "taxid": "2044936",
        "species_taxid": "2044936",
        "organism_name": "Bacteroidia bacterium",
        "infraspecific_name": "",
        "isolate": "5-aug_S3_008",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/08",
        "asm_name": "ASM2283996v1",
        "submitter": "Colorado State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/839/965/GCA_022839965.1_ASM2283996v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-08",
    "dateModified": "2022-04-08",
    "datePublished": "2022-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidia bacterium"
        ],
        "sample_taxid": [
            "2044936"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.869 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 68.8,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2998549",
        "Number of Sequences": "986",
        "Longest Sequences (bp)": "35997",
        "N50 (bp)": "3909",
        "Gap Ratio (%)": "0.087642",
        "GCcontent (%)": "43.5",
        "Number of CDSs": "1868",
        "Average Protein Length": "305.6",
        "Coding Ratio (%)": "57.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Proteiniphilum saccharofermentans",
                "strain": "strain=M3/6",
                "accession": "GCA_900095135.1",
                "taxid": 1642647,
                "species_taxid": 1642647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0416,
                "matched_fragments": 77,
                "total_fragments": 494,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum acetatigenes",
                "strain": "strain=DSM 18083",
                "accession": "GCA_000380985.1",
                "taxid": 294710,
                "species_taxid": 294710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.136,
                "matched_fragments": 81,
                "total_fragments": 494,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Petrimonas mucosa",
                "strain": "strain=ING2-E5A",
                "accession": "GCA_900095795.1",
                "taxid": 1642646,
                "species_taxid": 1642646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0951,
                "matched_fragments": 115,
                "total_fragments": 494,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 68.8,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001898165.1",
                "gtdb_species": "s__Petrimonas sp001898165",
                "ani": 98.5357,
                "matched_fragments": 418,
                "total_fragments": 494,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002356435.2",
                "gtdb_species": "s__Petrimonas sp002356435",
                "ani": 81.4904,
                "matched_fragments": 261,
                "total_fragments": 494,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCA_002316835.1",
                "gtdb_species": "s__Petrimonas sp002316835",
                "ani": 78.9981,
                "matched_fragments": 145,
                "total_fragments": 494,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002069095.1",
                "gtdb_species": "s__Petrimonas sp002069095",
                "ani": 78.7577,
                "matched_fragments": 114,
                "total_fragments": 494,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900095795.1",
                "gtdb_species": "s__Petrimonas mucosa",
                "ani": 77.0951,
                "matched_fragments": 115,
                "total_fragments": 494,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Petrimonas",
        "s__Petrimonas sp001898165"
    ],
    "_genome_taxon": [
        "Bacteroidia",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Petrimonas",
        "s__Petrimonas sp001898165",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Dysgonomonadaceae",
        "Petrimonas",
        "Petrimonas",
        "sp001898165"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}