{ "type": "genome", "identifier": "GCA_022841375.1", "organism": "Burkholderiales bacterium", "title": "Burkholderiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022841375.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474432", "wgs_master": "JALHRQ000000000.1", "refseq_category": "na", "taxid": "1891238", "species_taxid": "1891238", "organism_name": "Burkholderiales bacterium", "infraspecific_name": "", "isolate": "maxbin.188", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284137v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/841/375/GCA_022841375.1_ASM2284137v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiales bacterium" ], "sample_taxid": [ "1891238" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "1.145 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4075067", "Number of Sequences": "66", "Longest Sequences (bp)": "828479", "N50 (bp)": "224441", "Gap Ratio (%)": "0.004172", "GCcontent (%)": "59.6", "Number of CDSs": "3872", "Average Protein Length": "313.6", "Coding Ratio (%)": "89.4", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=NBRC 107929", "accession": "GCA_007992375.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.1096, "matched_fragments": 99, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.0502, "matched_fragments": 104, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 77.0123, "matched_fragments": 112, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.9891, "matched_fragments": 113, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis discipulorum", "strain": "strain=FAM1", "accession": "GCA_000527135.1", "taxid": 1119528, "species_taxid": 1119528, "relation_to_type": "type", "validated": true, "ani": 76.7941, "matched_fragments": 151, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 76.7059, "matched_fragments": 113, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 76.6258, "matched_fragments": 102, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 76.4737, "matched_fragments": 124, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 76.469, "matched_fragments": 137, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 76.4567, "matched_fragments": 132, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 76.4341, "matched_fragments": 104, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter intestini", "strain": "strain=GY 70310", "accession": "GCA_004919095.1", "taxid": 2563443, "species_taxid": 2563443, "relation_to_type": "type", "validated": true, "ani": 76.3336, "matched_fragments": 97, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dechloromonas hortensis", "strain": "strain=MA-1", "accession": "GCA_009469765.1", "taxid": 337779, "species_taxid": 337779, "relation_to_type": "type", "validated": true, "ani": 76.2168, "matched_fragments": 114, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter sedimenti", "strain": "strain=HX-7-9", "accession": "GCA_010435965.1", "taxid": 2705474, "species_taxid": 2705474, "relation_to_type": "type", "validated": true, "ani": 76.1421, "matched_fragments": 111, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=LMG 14191", "accession": "GCA_902832895.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0809, "matched_fragments": 120, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=DSM 10685", "accession": "GCA_001028665.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0643, "matched_fragments": 120, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia catudaia", "strain": "", "accession": "GCA_001544755.2", "taxid": 1777136, "species_taxid": 1777136, "relation_to_type": "type", "validated": true, "ani": 76.0641, "matched_fragments": 86, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomallei", "strain": "strain=ATCC 23343", "accession": "GCA_001182285.1", "taxid": 28450, "species_taxid": 28450, "relation_to_type": "type", "validated": true, "ani": 76.0436, "matched_fragments": 118, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea terrigena", "strain": "strain=LMG 31013", "accession": "GCA_902459705.1", "taxid": 2508292, "species_taxid": 2508292, "relation_to_type": "type", "validated": true, "ani": 76.0429, "matched_fragments": 78, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium amazonense", "strain": "strain=DSM 26508", "accession": "GCA_001855565.1", "taxid": 1382803, "species_taxid": 1382803, "relation_to_type": "type", "validated": true, "ani": 75.9124, "matched_fragments": 106, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", "accession": "GCA_000711955.1", "taxid": 418856, "species_taxid": 418856, "relation_to_type": "type", "validated": true, "ani": 75.4254, "matched_fragments": 88, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903933915.1", "gtdb_species": "s__Ga0077527 sp903933915", "ani": 87.5548, "matched_fragments": 879, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__Ga0077527", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001464815.1", "gtdb_species": "s__Ga0077527 sp001464815", "ani": 81.0, "matched_fragments": 691, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__Ga0077527", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003820645.1", "gtdb_species": "s__Ga0077527 sp003820645", "ani": 80.5457, "matched_fragments": 613, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__Ga0077527", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016177355.1", "gtdb_species": "s__SG8-41 sp016177355", "ani": 77.3604, "matched_fragments": 145, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__SG8-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902825845.1", "gtdb_species": "s__UBA5216 sp902825845", "ani": 77.2153, "matched_fragments": 325, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__UBA5216", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001771935.1", "gtdb_species": "s__SG8-41 sp001771935", "ani": 77.1673, "matched_fragments": 269, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__SG8-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016192835.1", "gtdb_species": "s__PALSA-1004 sp016192835", "ani": 77.0791, "matched_fragments": 209, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__PALSA-1004", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016868015.1", "gtdb_species": "s__UBA5216 sp016868015", "ani": 77.0383, "matched_fragments": 233, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__UBA5216", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016202565.1", "gtdb_species": "s__DSOT01 sp016202565", "ani": 77.0074, "matched_fragments": 209, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__DSOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001772005.1", "gtdb_species": "s__DSOT01 sp001772005", "ani": 76.9662, "matched_fragments": 287, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__DSOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002412495.1", "gtdb_species": "s__UBA5216 sp002412495", "ani": 76.9429, "matched_fragments": 279, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__UBA5216", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011046905.1", "gtdb_species": "s__DSOT01 sp011046905", "ani": 76.8859, "matched_fragments": 237, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__DSOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001771985.1", "gtdb_species": "s__DSOT01 sp001771985", "ani": 76.7157, "matched_fragments": 219, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__DSOT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016214145.1", "gtdb_species": "s__Desulfobacillus sp016214145", "ani": 76.6899, "matched_fragments": 167, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Desulfobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900299145.1", "gtdb_species": "s__UBA5216 sp900299145", "ani": 76.4828, "matched_fragments": 253, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__UBA5216", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903913965.1", "gtdb_species": "s__PALSA-1004 sp903913965", "ani": 76.4595, "matched_fragments": 187, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-41;g__PALSA-1004", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.70", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_008711155.1", "gtdb_species": "s__Azonexus sp008711155", "ani": 76.278, "matched_fragments": 117, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016709495.1", "gtdb_species": "s__Azonexus sp016709495", "ani": 75.8119, "matched_fragments": 56, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azonexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.239, "cell_length": 0.156, "doubling_h": 0.378, "growth_tmp": 29.607, "optimum_tmp": 29.969, "optimum_ph": 6.903, "genome_size": 5778279.099, "gc_content": 62.976, "coding_genes": 5025.666, "rRNA16S_genes": 3.776, "tRNA_genes": 58.305, "gram_stain": 0.0, "sporulation": 0.013, "motility": 0.751, "range_salinity": 0.26, "facultative_respiration": 0.09, "anaerobic_respiration": 0.028, "aerobic_respiration": 0.88, "mesophilic_range_tmp": 0.982, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 0.893, "coccus_cell_shape": 0.035, "filament_cell_shape": 0.003, "coccobacillus_cell_shape": 0.031, "vibrio_cell_shape": 0.021, "spiral_cell_shape": 0.014 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__SG8-41", "g__Ga0077527", "s__Ga0077527 sp022841375" ], "_genome_taxon": [ "Burkholderiales", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__SG8-41", "g__Ga0077527", "s__Ga0077527 sp022841375", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "SG8-41", "Ga0077527", "Ga0077527", "sp022841375" ], "_meo": [ { "id": "MEO_0001195", "label": "biofilter" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }